Subcellular Localization
min:
: max
Winner_takes_all: vacuole
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- extracellular 3
- endoplasmic reticulum 3
- vacuole 4
- plasma membrane 3
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_16s0100g00500.t01 | Wine grape | plastid | 48.47 | 38.54 |
| GSMUA_Achr1P16220_001 | Banana | nucleus | 37.7 | 37.05 |
| GSMUA_Achr10P... | Banana | nucleus | 39.88 | 35.35 |
| GSMUA_Achr1P07930_001 | Banana | nucleus | 40.03 | 34.63 |
| KXG34470 | Sorghum | nucleus, plastid | 34.06 | 31.71 |
| GSMUA_Achr2P03310_001 | Banana | nucleus | 36.68 | 31.23 |
| KXG19170 | Sorghum | plastid | 34.64 | 30.47 |
| GSMUA_Achr7P05870_001 | Banana | nucleus | 12.37 | 29.72 |
| Zm00001d018890_P006 | Maize | nucleus, plastid | 32.31 | 29.48 |
| Zm00001d045516_P006 | Maize | nucleus, plastid | 33.19 | 29.42 |
| TraesCS7B01G437100.1 | Wheat | plastid | 34.5 | 29.37 |
| Zm00001d035990_P002 | Maize | plastid | 33.33 | 29.36 |
| HORVU7Hr1G115870.4 | Barley | plastid | 33.77 | 28.82 |
| TraesCS7A01G520700.1 | Wheat | nucleus | 33.77 | 28.75 |
| Os06t0126000-02 | Rice | cytosol, nucleus | 33.48 | 27.98 |
| TraesCS7B01G047100.4 | Wheat | plastid | 33.48 | 27.03 |
| TraesCS7D01G510400.2 | Wheat | nucleus | 34.06 | 26.93 |
| TraesCS7D01G146100.2 | Wheat | nucleus, plastid | 32.9 | 26.84 |
| TraesCS7A01G144600.3 | Wheat | nucleus, plastid | 33.33 | 26.78 |
| HORVU7Hr1G029650.10 | Barley | plastid | 33.19 | 26.09 |
| TraesCS7D01G050000.5 | Wheat | nucleus, plastid | 32.46 | 26.02 |
| HORVU7Hr1G010050.2 | Barley | nucleus, plastid | 33.04 | 25.94 |
| TraesCS4A01G441500.1 | Wheat | nucleus, plastid | 32.46 | 25.84 |
| TraesCS7A01G054900.2 | Wheat | nucleus, plastid | 32.46 | 25.43 |
| VIT_18s0001g15320.t01 | Wine grape | nucleus, plastid | 32.02 | 24.1 |
| VIT_04s0044g01260.t01 | Wine grape | plastid | 28.38 | 22.36 |
Protein Annotations
| ArrayExpress:VIT_02s0025g04390 | EMBL:FN596251 | EnsemblPlants:VIT_02s0025g04390.t01 | EnsemblPlantsGene:VIT_02s0025g04390 | EntrezGene:100254797 | EntrezGene:LOC100254797 |
| InterPro:LIM-bd/SEUSS | PANTHER:PTHR10378 | PANTHER:PTHR10378:SF12 | PFAM:PF01803 | ProteinID:CCB58397 | ProteinID:CCB58397.1 |
| RefSeq:XP_002276270 | RefSeq:XP_002276270.2 | SEG:seg | UniParc:UPI00021085E3 | UniProt:F6HUH4 | wikigene:100254797 |
| wikigene:LOC100254797 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr2:-:3857081..3868306
Molecular Weight (calculated)
77480.2 Da
IEP (calculated)
8.670
GRAVY (calculated)
-0.573
Length
687 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSIRRNPVK FSFYWPLLAA VAVYTHTHRI TVFVNATSQP PSQTHYLSLL TGIKQEPDNS TQMPKKPRLE VQEEDFLHQQ IIQQLLQRKD SLQLQGHNPH
101: LQAWIQQHKM RNQQHQKILQ SIQQLQGVDM QQQQQQMRNQ LQQQGTHEVS AMRPSDSGIC SRRLMQYMYH QRHRPPDNAI SYWRKFVAEY YSPCAKKRWC
201: LSLYDNVGHH AKGVFPQSAM DTWQCDICGS RSGRGFEAIF EVLPQLIKIN FESGVIDELL FVDLPHESRF SSGLMMLEYG KAVQESVYEQ LRVVREGQLR
301: IIFTHDLKIL SWEFCTRHHE ELLPRQLVAP QVNQLVHAAQ KYQTTMNGSK SDGFCAQDLL VNCNRFLRAG HQLARNLELQ LVDELGFSKR YVRCLQIAEV
401: VDSMKDLMIF VRDSNIGPIE SLKNYPREAT TVKIKKKQLH HGEQPESGQD SPSNRASNLR DISSGLMTGS EEGALALTTR YQKMMRQSSL NSNSSTVKQE
501: PCLFNSSIPG ASSLPVQRPK SSSPGLIQIP PPVNSSSSIH SSQGSQNTQH CMIQKLLQEM MNNNRAKGLH NSNGGEEEVL CGINTSTIGG LPKKARGTSV
601: VRNELGCRDS TAAVASPANV LGSFVGRDKS FKAASSSKSS GTSENNGLVK REPDLPVPEA VQDVAHGLYE NDVFNADQES MEYGWKA
101: LQAWIQQHKM RNQQHQKILQ SIQQLQGVDM QQQQQQMRNQ LQQQGTHEVS AMRPSDSGIC SRRLMQYMYH QRHRPPDNAI SYWRKFVAEY YSPCAKKRWC
201: LSLYDNVGHH AKGVFPQSAM DTWQCDICGS RSGRGFEAIF EVLPQLIKIN FESGVIDELL FVDLPHESRF SSGLMMLEYG KAVQESVYEQ LRVVREGQLR
301: IIFTHDLKIL SWEFCTRHHE ELLPRQLVAP QVNQLVHAAQ KYQTTMNGSK SDGFCAQDLL VNCNRFLRAG HQLARNLELQ LVDELGFSKR YVRCLQIAEV
401: VDSMKDLMIF VRDSNIGPIE SLKNYPREAT TVKIKKKQLH HGEQPESGQD SPSNRASNLR DISSGLMTGS EEGALALTTR YQKMMRQSSL NSNSSTVKQE
501: PCLFNSSIPG ASSLPVQRPK SSSPGLIQIP PPVNSSSSIH SSQGSQNTQH CMIQKLLQEM MNNNRAKGLH NSNGGEEEVL CGINTSTIGG LPKKARGTSV
601: VRNELGCRDS TAAVASPANV LGSFVGRDKS FKAASSSKSS GTSENNGLVK REPDLPVPEA VQDVAHGLYE NDVFNADQES MEYGWKA
001: MASSTSGIFF QGDDESQSFI NSHLTSSYGN SSNSAPGCGG PTGGYHNLSM VSGDMHNPVM MSVSTPGPSA GASSLVTDAN SGLSGGGPHL QRSASINNES
101: YMRLPASPMS FSSNNISISG SSVVDGSTVV QRHDPSVQLG GSSATSLPTS QTNQIPLSMA RRASESFFQD PNNLTQARKK PRLDSKQDDA LQQQILRQWL
201: QRQDILQQQQ QQQQQGQNPQ FQILLQQQKL RQQQQYLQSL PPLQRVQLQQ QQQVQQQQQL QQQHQQQQQQ LQQQGMQMQL TGGPRPYENS VCARRLMQYL
301: YHQRQRPSES SIVYWRKFVT EYFSPRAKKR WCLSHYDNVG HSALGVSPQA ATDEWQCDLC GSKSGRGFEA TFDVLPRLNE IKFASGVLDE LLYLGVPSER
401: RYGSGIMVLE YGKAVQESVY EHIRVVREGH LRIIFSQELK ILSWEFCTRR HEELLPRRLV APQVNQLLQV AEKCQSTIDQ SGSDGIHQQD LQANSNMVMA
501: AGRQLAKSLE SHSLNDLGFS KRYVRCLQIS EVVSSMKDMI DFCRDQKVGP IEALKSYPYR MKAGKPQMQE MEQLAAARGL PPDRNSLNKL MALRNSGINI
601: PMNNMSGQGS LPGSAQAAAF ALTNYQSMLM KQNHLNSDLN NTTIQQEPSR NRSASPSYQG TSPLLPGFVH SPSISGVSSH LSPQRQMPSS SYNGSTQQYH
701: QQPPSCSSGN QTLEQQMIHQ IWQQMANSNG GSGQQQQSLS GQNMMNCNTN MGRNRTDYVP AAAETPSTSN RFRGIKGLDQ SQNLEGIISN TSLNFGNNGV
801: FSNEVDESMG GYSWKS
101: YMRLPASPMS FSSNNISISG SSVVDGSTVV QRHDPSVQLG GSSATSLPTS QTNQIPLSMA RRASESFFQD PNNLTQARKK PRLDSKQDDA LQQQILRQWL
201: QRQDILQQQQ QQQQQGQNPQ FQILLQQQKL RQQQQYLQSL PPLQRVQLQQ QQQVQQQQQL QQQHQQQQQQ LQQQGMQMQL TGGPRPYENS VCARRLMQYL
301: YHQRQRPSES SIVYWRKFVT EYFSPRAKKR WCLSHYDNVG HSALGVSPQA ATDEWQCDLC GSKSGRGFEA TFDVLPRLNE IKFASGVLDE LLYLGVPSER
401: RYGSGIMVLE YGKAVQESVY EHIRVVREGH LRIIFSQELK ILSWEFCTRR HEELLPRRLV APQVNQLLQV AEKCQSTIDQ SGSDGIHQQD LQANSNMVMA
501: AGRQLAKSLE SHSLNDLGFS KRYVRCLQIS EVVSSMKDMI DFCRDQKVGP IEALKSYPYR MKAGKPQMQE MEQLAAARGL PPDRNSLNKL MALRNSGINI
601: PMNNMSGQGS LPGSAQAAAF ALTNYQSMLM KQNHLNSDLN NTTIQQEPSR NRSASPSYQG TSPLLPGFVH SPSISGVSSH LSPQRQMPSS SYNGSTQQYH
701: QQPPSCSSGN QTLEQQMIHQ IWQQMANSNG GSGQQQQSLS GQNMMNCNTN MGRNRTDYVP AAAETPSTSN RFRGIKGLDQ SQNLEGIISN TSLNFGNNGV
801: FSNEVDESMG GYSWKS
Arabidopsis Description
SLK2Probable transcriptional regulator SLK2 [Source:UniProtKB/Swiss-Prot;Acc:Q94BP0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.