Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 1
- cytosol 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS7D01G146100.2 | Wheat | nucleus, plastid | 89.13 | 92.52 |
TraesCS7A01G144600.3 | Wheat | nucleus, plastid | 90.16 | 92.16 |
TraesCS4A01G441500.1 | Wheat | nucleus, plastid | 89.82 | 90.96 |
HORVU7Hr1G010050.2 | Barley | nucleus, plastid | 90.85 | 90.74 |
TraesCS7D01G050000.5 | Wheat | nucleus, plastid | 88.44 | 90.2 |
TraesCS7B01G047100.4 | Wheat | plastid | 86.96 | 89.31 |
TraesCS7A01G054900.2 | Wheat | nucleus, plastid | 88.9 | 88.6 |
HORVU7Hr1G115870.4 | Barley | plastid | 62.36 | 67.7 |
Os06t0126000-02 | Rice | cytosol, nucleus | 61.56 | 65.45 |
KXG19170 | Sorghum | plastid | 54.92 | 61.46 |
KXG34470 | Sorghum | nucleus, plastid | 51.03 | 60.43 |
Zm00001d035990_P002 | Maize | plastid | 53.09 | 59.49 |
Zm00001d045516_P006 | Maize | nucleus, plastid | 51.83 | 58.45 |
Zm00001d018890_P006 | Maize | nucleus, plastid | 46.8 | 54.32 |
GSMUA_Achr7P05870_001 | Banana | nucleus | 14.99 | 45.8 |
Solyc03g026190.2.1 | Tomato | plastid | 27.57 | 42.73 |
KRG88471 | Soybean | nucleus, plastid | 20.37 | 41.59 |
GSMUA_Achr1P16220_001 | Banana | nucleus | 32.61 | 40.77 |
KRH38603 | Soybean | plastid | 24.71 | 40.68 |
GSMUA_Achr1P07930_001 | Banana | nucleus | 34.1 | 37.53 |
KRH38604 | Soybean | nucleus | 33.87 | 36.63 |
GSMUA_Achr10P... | Banana | nucleus | 32.38 | 36.52 |
CDX92713 | Canola | nucleus, plastid | 28.26 | 35.95 |
CDY57709 | Canola | nucleus, plastid | 20.02 | 35.57 |
CDY50201 | Canola | nucleus, plastid | 27.57 | 35.34 |
Bra019159.1-P | Field mustard | nucleus, plastid | 27.57 | 35.34 |
VIT_16s0100g00500.t01 | Wine grape | plastid | 34.78 | 35.19 |
CDY52362 | Canola | nucleus | 27.46 | 34.88 |
CDX89417 | Canola | nucleus | 15.33 | 34.81 |
CDY54085 | Canola | nucleus, plastid | 28.03 | 34.75 |
AT4G25515.1 | Thale cress | nucleus, plastid | 27.12 | 34.6 |
KRH09131 | Soybean | nucleus, plastid | 34.1 | 34.29 |
KRH09132 | Soybean | plastid | 34.1 | 33.9 |
CDY30691 | Canola | nucleus | 29.06 | 33.51 |
VIT_02s0025g04390.t01 | Wine grape | vacuole | 26.09 | 33.19 |
Bra010458.1-P | Field mustard | nucleus, plastid | 22.54 | 32.67 |
AT5G62090.1 | Thale cress | nucleus | 30.43 | 32.6 |
GSMUA_Achr2P03310_001 | Banana | nucleus | 30.09 | 32.59 |
AT4G25520.1 | Thale cress | plastid | 27.57 | 32.22 |
PGSC0003DMT400037024 | Potato | plastid | 33.64 | 32.1 |
CDX92714 | Canola | cytosol | 19.45 | 31.95 |
Bra013897.1-P | Field mustard | nucleus | 14.07 | 30.83 |
Bra029289.1-P | Field mustard | nucleus | 22.2 | 29.35 |
HORVU4Hr1G017160.3 | Barley | nucleus, plastid | 21.97 | 20.82 |
HORVU4Hr1G017140.2 | Barley | plastid | 21.97 | 20.47 |
Protein Annotations
EnsemblPlants:HORVU7Hr1G029650.10 | EnsemblPlantsGene:HORVU7Hr1G029650 | InterPro:LIM-bd/SEUSS | ncoils:Coil | PANTHER:PTHR10378 | PANTHER:PTHR10378:SF12 |
PFAM:PF01803 | SEG:seg | UniParc:UPI000B47C8CF | UniProt:A0A287VWF1 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chrchr7H:+:55874220..55879761
Molecular Weight (calculated)
95385.6 Da
IEP (calculated)
8.989
GRAVY (calculated)
-0.770
Length
874 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGAPCSNLG FVSRDMNGSL PVSTTNSSGP SIGVSSLVTD GNSSLSGGAQ FQQSTSMNAD SFMRLPASPM SFSSNNISGS SVIDGSIMQQ SPPQEQMQKQ
101: RASSVTSQPV IDAAASFHAQ KKPRVDIRQD DILQQQLIQQ LLQGQSSLHL QGQHNPQLQA LIRQHKLAQI QQQQQHQLSQ QFPQHQHSQV GIPRQPQLRP
201: PLAQPGIQLP GPVRTPVESG LCSRRLMQYL YHKRYRPDNN PITYWRKLID EYFAPRSRER WCVSSYEKPG NTSAAIPQTS PGTWRCDICN THSGKGYEAT
301: SEILPRLCQI RFDHGVKDEY LFLDMPNEFR LPNGLLLLEH AKVVQKSIYE HQHVTHEGQL RIIFTPELKI MSWEFCSRKH DEYVTRKFLT DQVTHMMRAT
401: QSYQATVTKN GSAGLSNDEA QNACNQFASA SRQLVKNIDH HSLNEHGLSK RYVRCLQISE VVNHMKDLIE FSHKNKLGPI EGLKNYPKQT AGPKLTVQNL
501: HDSKAVKTEM SPHVNNEVPG VGAISNNPQN PAAQSNYQHM LRSSSANQGL LQQEASQDAA AMNSYQNMFR SSSTNQGLLQ QEASQNAAAL NNYQNMLRGS
601: SPNQSLLQQE ASSIFKGPTA VHSGIQLEAS RSFRAAQLGQ FQHPMSFQQG MPQHQHTNFQ GLGASPQFQQ HVINQLLQEA KNTNSRALAH QQQQQXXXXX
701: XXXXXXXXQQ QQQQQQQQQQ QQQQQQHQQQ QQQQQQHRQQ QQQHQHQQQH QQQQQSPSTP NANGGLASGA AVANTAASGE QAQHMNNGAA KGAALMGMAG
801: PSNLINSGAA MVQRSSSFKS VSSNPAASGG NVATPKAESV HDMGDLEHLI SHELMESGLF MGEQPGDGGF SWNI
101: RASSVTSQPV IDAAASFHAQ KKPRVDIRQD DILQQQLIQQ LLQGQSSLHL QGQHNPQLQA LIRQHKLAQI QQQQQHQLSQ QFPQHQHSQV GIPRQPQLRP
201: PLAQPGIQLP GPVRTPVESG LCSRRLMQYL YHKRYRPDNN PITYWRKLID EYFAPRSRER WCVSSYEKPG NTSAAIPQTS PGTWRCDICN THSGKGYEAT
301: SEILPRLCQI RFDHGVKDEY LFLDMPNEFR LPNGLLLLEH AKVVQKSIYE HQHVTHEGQL RIIFTPELKI MSWEFCSRKH DEYVTRKFLT DQVTHMMRAT
401: QSYQATVTKN GSAGLSNDEA QNACNQFASA SRQLVKNIDH HSLNEHGLSK RYVRCLQISE VVNHMKDLIE FSHKNKLGPI EGLKNYPKQT AGPKLTVQNL
501: HDSKAVKTEM SPHVNNEVPG VGAISNNPQN PAAQSNYQHM LRSSSANQGL LQQEASQDAA AMNSYQNMFR SSSTNQGLLQ QEASQNAAAL NNYQNMLRGS
601: SPNQSLLQQE ASSIFKGPTA VHSGIQLEAS RSFRAAQLGQ FQHPMSFQQG MPQHQHTNFQ GLGASPQFQQ HVINQLLQEA KNTNSRALAH QQQQQXXXXX
701: XXXXXXXXQQ QQQQQQQQQQ QQQQQQHQQQ QQQQQQHRQQ QQQHQHQQQH QQQQQSPSTP NANGGLASGA AVANTAASGE QAQHMNNGAA KGAALMGMAG
801: PSNLINSGAA MVQRSSSFKS VSSNPAASGG NVATPKAESV HDMGDLEHLI SHELMESGLF MGEQPGDGGF SWNI
001: MQRSSGINNL HIPTSPMSFS SNGINLPGSM VLDGSPSMQH LPQQQQRQLL EQQAGQGSVP MRENSYSHVD KKLRLEVKQE DLLQQQILQQ LIQRQDPTGR
101: NPQMQALLQQ QRVRQHQQML QSMSPSQRLQ LQKQQQLRQQ LQQQGTQQIS PNVRPYEVGV CARKLMMYLY HLQQRPAENC ITYWRKFVAE YFSPRAKQRL
201: CLSQYESVGH HALGMFPQAA PDMWQCDLCG TKSGKGFEAT FDVLARLIEI KFASGIIDEL LYLDHPRENR FPNGLMMLEY RKAVQETVHE QFRVVREGHL
301: RIIFSPDLKI LSWEFCARRH EELLLRRLIA PQVNQLLQVA QKCQSTISES GSQGVSQQDI QSNSNMVLGA GRQLAKFMEL QSLNDLGYPK RYIRTLQISE
401: VVKSMKDLMN FTGEHKVGPL EGLKQLLEQT ATVKLQRQKM QEMEQFGNSG AMSGPAQAQM TLSSGTMSGS TANNNSNNHH QIVGRGAMNG SPQATAALTN
501: YQSMLIRQNA MNNQNSNTGN QEGFSSQNPT LNSNQSPSSS SQQRENLATS GFPSSPQMQQ QQHILNGTPN MLPQNHPHQL QSPHSHGNTQ EQQMLHQLLQ
601: EMTENGASVE QQQAFPGQSG SNNNTERNTT ASTSNISGGG RVPSRINSFK ASSNNNLPFS EDISVTDHDF SEDGFFNNSD IYGGL
101: NPQMQALLQQ QRVRQHQQML QSMSPSQRLQ LQKQQQLRQQ LQQQGTQQIS PNVRPYEVGV CARKLMMYLY HLQQRPAENC ITYWRKFVAE YFSPRAKQRL
201: CLSQYESVGH HALGMFPQAA PDMWQCDLCG TKSGKGFEAT FDVLARLIEI KFASGIIDEL LYLDHPRENR FPNGLMMLEY RKAVQETVHE QFRVVREGHL
301: RIIFSPDLKI LSWEFCARRH EELLLRRLIA PQVNQLLQVA QKCQSTISES GSQGVSQQDI QSNSNMVLGA GRQLAKFMEL QSLNDLGYPK RYIRTLQISE
401: VVKSMKDLMN FTGEHKVGPL EGLKQLLEQT ATVKLQRQKM QEMEQFGNSG AMSGPAQAQM TLSSGTMSGS TANNNSNNHH QIVGRGAMNG SPQATAALTN
501: YQSMLIRQNA MNNQNSNTGN QEGFSSQNPT LNSNQSPSSS SQQRENLATS GFPSSPQMQQ QQHILNGTPN MLPQNHPHQL QSPHSHGNTQ EQQMLHQLLQ
601: EMTENGASVE QQQAFPGQSG SNNNTERNTT ASTSNISGGG RVPSRINSFK ASSNNNLPFS EDISVTDHDF SEDGFFNNSD IYGGL
Arabidopsis Description
SLK3Probable transcriptional regulator SLK3 [Source:UniProtKB/Swiss-Prot;Acc:F4JT98]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.