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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 3
  • mitochondrion 1
  • cytosol 1
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS7D01G146100.2 Wheat nucleus, plastid 89.13 92.52
TraesCS7A01G144600.3 Wheat nucleus, plastid 90.16 92.16
TraesCS4A01G441500.1 Wheat nucleus, plastid 89.82 90.96
HORVU7Hr1G010050.2 Barley nucleus, plastid 90.85 90.74
TraesCS7D01G050000.5 Wheat nucleus, plastid 88.44 90.2
TraesCS7B01G047100.4 Wheat plastid 86.96 89.31
TraesCS7A01G054900.2 Wheat nucleus, plastid 88.9 88.6
HORVU7Hr1G115870.4 Barley plastid 62.36 67.7
Os06t0126000-02 Rice cytosol, nucleus 61.56 65.45
KXG19170 Sorghum plastid 54.92 61.46
KXG34470 Sorghum nucleus, plastid 51.03 60.43
Zm00001d035990_P002 Maize plastid 53.09 59.49
Zm00001d045516_P006 Maize nucleus, plastid 51.83 58.45
Zm00001d018890_P006 Maize nucleus, plastid 46.8 54.32
GSMUA_Achr7P05870_001 Banana nucleus 14.99 45.8
Solyc03g026190.2.1 Tomato plastid 27.57 42.73
KRG88471 Soybean nucleus, plastid 20.37 41.59
GSMUA_Achr1P16220_001 Banana nucleus 32.61 40.77
KRH38603 Soybean plastid 24.71 40.68
GSMUA_Achr1P07930_001 Banana nucleus 34.1 37.53
KRH38604 Soybean nucleus 33.87 36.63
GSMUA_Achr10P... Banana nucleus 32.38 36.52
CDX92713 Canola nucleus, plastid 28.26 35.95
CDY57709 Canola nucleus, plastid 20.02 35.57
CDY50201 Canola nucleus, plastid 27.57 35.34
Bra019159.1-P Field mustard nucleus, plastid 27.57 35.34
VIT_16s0100g00500.t01 Wine grape plastid 34.78 35.19
CDY52362 Canola nucleus 27.46 34.88
CDX89417 Canola nucleus 15.33 34.81
CDY54085 Canola nucleus, plastid 28.03 34.75
AT4G25515.1 Thale cress nucleus, plastid 27.12 34.6
KRH09131 Soybean nucleus, plastid 34.1 34.29
KRH09132 Soybean plastid 34.1 33.9
CDY30691 Canola nucleus 29.06 33.51
VIT_02s0025g04390.t01 Wine grape vacuole 26.09 33.19
Bra010458.1-P Field mustard nucleus, plastid 22.54 32.67
AT5G62090.1 Thale cress nucleus 30.43 32.6
GSMUA_Achr2P03310_001 Banana nucleus 30.09 32.59
AT4G25520.1 Thale cress plastid 27.57 32.22
PGSC0003DMT400037024 Potato plastid 33.64 32.1
CDX92714 Canola cytosol 19.45 31.95
Bra013897.1-P Field mustard nucleus 14.07 30.83
Bra029289.1-P Field mustard nucleus 22.2 29.35
HORVU4Hr1G017160.3 Barley nucleus, plastid 21.97 20.82
HORVU4Hr1G017140.2 Barley plastid 21.97 20.47
Protein Annotations
EnsemblPlants:HORVU7Hr1G029650.10EnsemblPlantsGene:HORVU7Hr1G029650InterPro:LIM-bd/SEUSSncoils:CoilPANTHER:PTHR10378PANTHER:PTHR10378:SF12
PFAM:PF01803SEG:segUniParc:UPI000B47C8CFUniProt:A0A287VWF1MapMan:35.1:
Description
No Description!
Coordinates
chrchr7H:+:55874220..55879761
Molecular Weight (calculated)
95385.6 Da
IEP (calculated)
8.989
GRAVY (calculated)
-0.770
Length
874 amino acids
Sequence
(BLAST)
001: MSGAPCSNLG FVSRDMNGSL PVSTTNSSGP SIGVSSLVTD GNSSLSGGAQ FQQSTSMNAD SFMRLPASPM SFSSNNISGS SVIDGSIMQQ SPPQEQMQKQ
101: RASSVTSQPV IDAAASFHAQ KKPRVDIRQD DILQQQLIQQ LLQGQSSLHL QGQHNPQLQA LIRQHKLAQI QQQQQHQLSQ QFPQHQHSQV GIPRQPQLRP
201: PLAQPGIQLP GPVRTPVESG LCSRRLMQYL YHKRYRPDNN PITYWRKLID EYFAPRSRER WCVSSYEKPG NTSAAIPQTS PGTWRCDICN THSGKGYEAT
301: SEILPRLCQI RFDHGVKDEY LFLDMPNEFR LPNGLLLLEH AKVVQKSIYE HQHVTHEGQL RIIFTPELKI MSWEFCSRKH DEYVTRKFLT DQVTHMMRAT
401: QSYQATVTKN GSAGLSNDEA QNACNQFASA SRQLVKNIDH HSLNEHGLSK RYVRCLQISE VVNHMKDLIE FSHKNKLGPI EGLKNYPKQT AGPKLTVQNL
501: HDSKAVKTEM SPHVNNEVPG VGAISNNPQN PAAQSNYQHM LRSSSANQGL LQQEASQDAA AMNSYQNMFR SSSTNQGLLQ QEASQNAAAL NNYQNMLRGS
601: SPNQSLLQQE ASSIFKGPTA VHSGIQLEAS RSFRAAQLGQ FQHPMSFQQG MPQHQHTNFQ GLGASPQFQQ HVINQLLQEA KNTNSRALAH QQQQQXXXXX
701: XXXXXXXXQQ QQQQQQQQQQ QQQQQQHQQQ QQQQQQHRQQ QQQHQHQQQH QQQQQSPSTP NANGGLASGA AVANTAASGE QAQHMNNGAA KGAALMGMAG
801: PSNLINSGAA MVQRSSSFKS VSSNPAASGG NVATPKAESV HDMGDLEHLI SHELMESGLF MGEQPGDGGF SWNI
Best Arabidopsis Sequence Match ( AT4G25515.1 )
(BLAST)
001: MQRSSGINNL HIPTSPMSFS SNGINLPGSM VLDGSPSMQH LPQQQQRQLL EQQAGQGSVP MRENSYSHVD KKLRLEVKQE DLLQQQILQQ LIQRQDPTGR
101: NPQMQALLQQ QRVRQHQQML QSMSPSQRLQ LQKQQQLRQQ LQQQGTQQIS PNVRPYEVGV CARKLMMYLY HLQQRPAENC ITYWRKFVAE YFSPRAKQRL
201: CLSQYESVGH HALGMFPQAA PDMWQCDLCG TKSGKGFEAT FDVLARLIEI KFASGIIDEL LYLDHPRENR FPNGLMMLEY RKAVQETVHE QFRVVREGHL
301: RIIFSPDLKI LSWEFCARRH EELLLRRLIA PQVNQLLQVA QKCQSTISES GSQGVSQQDI QSNSNMVLGA GRQLAKFMEL QSLNDLGYPK RYIRTLQISE
401: VVKSMKDLMN FTGEHKVGPL EGLKQLLEQT ATVKLQRQKM QEMEQFGNSG AMSGPAQAQM TLSSGTMSGS TANNNSNNHH QIVGRGAMNG SPQATAALTN
501: YQSMLIRQNA MNNQNSNTGN QEGFSSQNPT LNSNQSPSSS SQQRENLATS GFPSSPQMQQ QQHILNGTPN MLPQNHPHQL QSPHSHGNTQ EQQMLHQLLQ
601: EMTENGASVE QQQAFPGQSG SNNNTERNTT ASTSNISGGG RVPSRINSFK ASSNNNLPFS EDISVTDHDF SEDGFFNNSD IYGGL
Arabidopsis Description
SLK3Probable transcriptional regulator SLK3 [Source:UniProtKB/Swiss-Prot;Acc:F4JT98]
SUBAcon: [plastid,nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.