Factsheet for AT4G25520.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 5
plastid 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT4G25515.1	Thale cress	nucleus, plastid	67.25	73.43
CDY52362	Canola	nucleus	63.9	69.48
CDY54085	Canola	nucleus, plastid	64.71	68.65
CDX92713	Canola	nucleus, plastid	61.36	66.81
Bra019159.1-P	Field mustard	nucleus, plastid	59.76	65.54
CDY50201	Canola	nucleus, plastid	59.76	65.54
Bra010458.1-P	Field mustard	nucleus, plastid	50.94	63.18
CDX92714	Canola	cytosol	36.63	51.5
KRG88471	Soybean	nucleus, plastid	29.01	50.7
Solyc03g026190.2.1	Tomato	plastid	36.1	47.87
KRH38603	Soybean	plastid	31.68	44.63
KRH38604	Soybean	nucleus	44.25	40.97
KRH09131	Soybean	nucleus, plastid	47.33	40.74
AT5G62090.1	Thale cress	nucleus	44.12	40.44
VIT_16s0100g00500.t01	Wine grape	plastid	46.26	40.05
KRH09132	Soybean	plastid	44.79	38.11
PGSC0003DMT400037024	Potato	plastid	44.92	36.68
GSMUA_Achr1P16220_001	Banana	nucleus	34.22	36.62
GSMUA_Achr1P07930_001	Banana	nucleus	38.1	35.89
GSMUA_Achr10P...	Banana	nucleus	35.83	34.58
KXG34470	Sorghum	nucleus, plastid	33.16	33.6
GSMUA_Achr7P05870_001	Banana	nucleus	12.7	33.22
Os06t0126000-02	Rice	cytosol, nucleus	35.83	32.6
TraesCS7A01G520700.1	Wheat	nucleus	35.16	32.59
KXG19170	Sorghum	plastid	33.82	32.39
TraesCS7B01G437100.1	Wheat	plastid	34.89	32.34
Zm00001d018890_P006	Maize	nucleus, plastid	32.35	32.14
Zm00001d045516_P006	Maize	nucleus, plastid	33.29	32.13
Zm00001d035990_P002	Maize	plastid	33.16	31.79
HORVU7Hr1G115870.4	Barley	plastid	32.89	30.56
TraesCS7D01G510400.2	Wheat	nucleus	35.16	30.26
GSMUA_Achr2P03310_001	Banana	nucleus	31.68	29.37
TraesCS7D01G146100.2	Wheat	nucleus, plastid	33.02	29.33
TraesCS7B01G047100.4	Wheat	plastid	32.89	28.91
TraesCS7A01G144600.3	Wheat	nucleus, plastid	32.89	28.77
TraesCS7D01G050000.5	Wheat	nucleus, plastid	32.89	28.7
TraesCS4A01G441500.1	Wheat	nucleus, plastid	32.89	28.51
TraesCS7A01G054900.2	Wheat	nucleus, plastid	32.89	28.05
HORVU7Hr1G010050.2	Barley	nucleus, plastid	32.75	28.0
HORVU7Hr1G029650.10	Barley	plastid	32.22	27.57
AT1G43850.1	Thale cress	nucleus, plastid	27.67	23.6

Protein Annotations

MapMan:35.1	EntrezGene:828657	ProteinID:AEE85073.1	EMBL:AK226715	ProteinID:ANM67173.1	ArrayExpress:AT4G25520
EnsemblPlantsGene:AT4G25520	RefSeq:AT4G25520	TAIR:AT4G25520	RefSeq:AT4G25520-TAIR-G	EnsemblPlants:AT4G25520.1	TAIR:AT4G25520.1
Unigene:At.27857	EMBL:BT012580	ProteinID:CAA18174.1	ProteinID:CAB81362.1	GO:GO:0000003	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793
GO:GO:0009908	GO:GO:0009987	GO:GO:0030154	GO:GO:0047484	GO:GO:0048467	GO:GO:0048481
GO:GO:1901001	InterPro:LIM-bd/SEUSS	RefSeq:NP_001320064.1	RefSeq:NP_194282.2	PFAM:PF01803	PO:PO:0000013
PO:PO:0000018	PO:PO:0000019	PO:PO:0000037	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054
PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095
PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616
PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025
PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047
PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022
PO:PO:0025281	PANTHER:PTHR10378	PANTHER:PTHR10378:SF12	UniProt:Q0WVM7	Symbol:SLK1	UniParc:UPI0000DB50B9
SEG:seg	:	:	:	:	:

Description

SLK1Probable transcriptional regulator SLK1 [Source:UniProtKB/Swiss-Prot;Acc:Q0WVM7]

Coordinates

chr4:-:13032157..13036471

Molecular Weight (calculated)

83319.5 Da

IEP (calculated)

8.954

GRAVY (calculated)

-0.713

Length

748 amino acids

Sequence
(BLAST)

001: MNRTVVSGAV ESSFSLTDAV GTEALNMQRS SGINNNMRIP TSPMSFSSNS VNIPGSLVLD GSAASMQHLP QQQQQQLLQQ QTGQGSVPMR ENNYSHVDKK
101: PRLEVKQEDM LQQQILQQLI QRQDPTGRNP QMQALLQQQR LRQHQQMLQS MSPSQRLQLQ QQQQLRQQLQ QQGTQQIPPN VRPYEVGVCA RKLMMYLYHL
201: QQRPAENCIT YWRKFVAEYF SPRAKQRLCL SQYESAGHHA LGMFPQAAPD MWQCDLCGTK SGKGFEATFD VLARLIEIKF ASGIIDELLY LDHPRENRFP
301: NGLMMLEYRK AVQETVHEQF RVVREGHLRI IFSQDLKILS WEFCARRHEE LLLRRLIAPQ VNQLLQVAQK CQSTISESGS EGVSQQDLQS NSNMVLGAGR
401: QLAKFMELQS LNDLGYPKRY IRTLQISEVV KSMKDLMNFT GEQKIGPIEG LKRLLEQTVT VKLQKQKMQE MEQFGNNGAI NGPVQAQMVL TSGTMNGSTG
501: NNTNNHHQIV GRGAMSGPAE GQMVISSGTV SGATANNNSN NHNQIVGRGA MNGSAQAAAA LTNYQSMLMR QNAMNNPNSN TGKQEGFSSQ NPTPNSNQSP
601: SSSSQQRHNL VTGGFPNSPQ MQQQQRTMNG PTNILPQNHP HQLQSPHSHG NTPEQQMLHQ LLQEMSENGG SVQQQQAFSG QSGSNSNAER NTTASTSNIS
701: GGGRAPSRNN SFKAASNNNL HFSEDISITD HDFSEDGFFN NNDIYGGL

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.