Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY30691 | Canola | nucleus | 60.05 | 64.64 |
| KRG88471 | Soybean | nucleus, plastid | 33.09 | 63.08 |
| Solyc03g026190.2.1 | Tomato | plastid | 43.38 | 62.77 |
| Bra029289.1-P | Field mustard | nucleus | 49.14 | 60.67 |
| KRH38603 | Soybean | plastid | 37.38 | 57.44 |
| VIT_16s0100g00500.t01 | Wine grape | plastid | 55.51 | 52.43 |
| KRH38604 | Soybean | nucleus | 50.61 | 51.11 |
| KRH09131 | Soybean | nucleus, plastid | 53.31 | 50.06 |
| KRH09132 | Soybean | plastid | 51.84 | 48.12 |
| AT4G25515.1 | Thale cress | nucleus, plastid | 38.73 | 46.13 |
| PGSC0003DMT400037024 | Potato | plastid | 51.23 | 45.63 |
| GSMUA_Achr7P05870_001 | Banana | nucleus | 15.81 | 45.1 |
| AT4G25520.1 | Thale cress | plastid | 40.44 | 44.12 |
| GSMUA_Achr1P16220_001 | Banana | nucleus | 36.52 | 42.63 |
| GSMUA_Achr10P... | Banana | nucleus | 38.6 | 40.65 |
| GSMUA_Achr1P07930_001 | Banana | nucleus | 36.52 | 37.53 |
| KXG19170 | Sorghum | plastid | 34.8 | 36.36 |
| KXG34470 | Sorghum | nucleus, plastid | 32.48 | 35.91 |
| Os06t0126000-02 | Rice | cytosol, nucleus | 35.91 | 35.64 |
| Zm00001d045516_P006 | Maize | nucleus, plastid | 33.82 | 35.61 |
| Zm00001d035990_P002 | Maize | plastid | 33.58 | 35.13 |
| TraesCS7A01G520700.1 | Wheat | nucleus | 34.44 | 34.82 |
| TraesCS7B01G437100.1 | Wheat | plastid | 34.31 | 34.7 |
| GSMUA_Achr2P03310_001 | Banana | nucleus | 33.82 | 34.2 |
| Zm00001d018890_P006 | Maize | nucleus, plastid | 31.5 | 34.13 |
| HORVU7Hr1G115870.4 | Barley | plastid | 33.33 | 33.79 |
| TraesCS7D01G510400.2 | Wheat | nucleus | 34.56 | 32.45 |
| TraesCS7D01G146100.2 | Wheat | nucleus, plastid | 31.99 | 31.0 |
| TraesCS7B01G047100.4 | Wheat | plastid | 32.23 | 30.9 |
| TraesCS7A01G144600.3 | Wheat | nucleus, plastid | 32.11 | 30.64 |
| HORVU7Hr1G010050.2 | Barley | nucleus, plastid | 32.84 | 30.63 |
| HORVU7Hr1G029650.10 | Barley | plastid | 32.6 | 30.43 |
| TraesCS7D01G050000.5 | Wheat | nucleus, plastid | 31.86 | 30.34 |
| TraesCS4A01G441500.1 | Wheat | nucleus, plastid | 31.74 | 30.01 |
| TraesCS7A01G054900.2 | Wheat | nucleus, plastid | 31.62 | 29.42 |
| AT1G43850.1 | Thale cress | nucleus, plastid | 27.08 | 25.2 |
Protein Annotations
| MapMan:35.1 | EntrezGene:836329 | ProteinID:AED97560.1 | ProteinID:AED97561.1 | ProteinID:ANM70821.1 | ArrayExpress:AT5G62090 |
| EnsemblPlantsGene:AT5G62090 | RefSeq:AT5G62090 | TAIR:AT5G62090 | RefSeq:AT5G62090-TAIR-G | EnsemblPlants:AT5G62090.1 | TAIR:AT5G62090.1 |
| EMBL:AY039981 | EMBL:AY150458 | Unigene:At.20808 | ProteinID:BAB10171.1 | ncoils:Coil | GO:GO:0000003 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006950 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009628 | GO:GO:0009790 | GO:GO:0009791 |
| GO:GO:0009793 | GO:GO:0009908 | GO:GO:0009987 | GO:GO:0010044 | GO:GO:0030154 | GO:GO:0047484 |
| GO:GO:0048467 | GO:GO:0048481 | GO:GO:1901001 | InterPro:LIM-bd/SEUSS | RefSeq:NP_001332402.1 | RefSeq:NP_201015.1 |
| RefSeq:NP_851245.1 | PFAM:PF01803 | PO:PO:0000018 | PO:PO:0000019 | PO:PO:0000037 | PO:PO:0000293 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007095 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR10378 | PANTHER:PTHR10378:SF12 | UniProt:Q94BP0 | Symbol:SLK2 |
| UniParc:UPI00000AC154 | SEG:seg | : | : | : | : |
Description
SLK2Probable transcriptional regulator SLK2 [Source:UniProtKB/Swiss-Prot;Acc:Q94BP0]
Coordinates
chr5:-:24934963..24939169
Molecular Weight (calculated)
90553.4 Da
IEP (calculated)
8.781
GRAVY (calculated)
-0.699
Length
816 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSTSGIFF QGDDESQSFI NSHLTSSYGN SSNSAPGCGG PTGGYHNLSM VSGDMHNPVM MSVSTPGPSA GASSLVTDAN SGLSGGGPHL QRSASINNES
101: YMRLPASPMS FSSNNISISG SSVVDGSTVV QRHDPSVQLG GSSATSLPTS QTNQIPLSMA RRASESFFQD PNNLTQARKK PRLDSKQDDA LQQQILRQWL
201: QRQDILQQQQ QQQQQGQNPQ FQILLQQQKL RQQQQYLQSL PPLQRVQLQQ QQQVQQQQQL QQQHQQQQQQ LQQQGMQMQL TGGPRPYENS VCARRLMQYL
301: YHQRQRPSES SIVYWRKFVT EYFSPRAKKR WCLSHYDNVG HSALGVSPQA ATDEWQCDLC GSKSGRGFEA TFDVLPRLNE IKFASGVLDE LLYLGVPSER
401: RYGSGIMVLE YGKAVQESVY EHIRVVREGH LRIIFSQELK ILSWEFCTRR HEELLPRRLV APQVNQLLQV AEKCQSTIDQ SGSDGIHQQD LQANSNMVMA
501: AGRQLAKSLE SHSLNDLGFS KRYVRCLQIS EVVSSMKDMI DFCRDQKVGP IEALKSYPYR MKAGKPQMQE MEQLAAARGL PPDRNSLNKL MALRNSGINI
601: PMNNMSGQGS LPGSAQAAAF ALTNYQSMLM KQNHLNSDLN NTTIQQEPSR NRSASPSYQG TSPLLPGFVH SPSISGVSSH LSPQRQMPSS SYNGSTQQYH
701: QQPPSCSSGN QTLEQQMIHQ IWQQMANSNG GSGQQQQSLS GQNMMNCNTN MGRNRTDYVP AAAETPSTSN RFRGIKGLDQ SQNLEGIISN TSLNFGNNGV
801: FSNEVDESMG GYSWKS
101: YMRLPASPMS FSSNNISISG SSVVDGSTVV QRHDPSVQLG GSSATSLPTS QTNQIPLSMA RRASESFFQD PNNLTQARKK PRLDSKQDDA LQQQILRQWL
201: QRQDILQQQQ QQQQQGQNPQ FQILLQQQKL RQQQQYLQSL PPLQRVQLQQ QQQVQQQQQL QQQHQQQQQQ LQQQGMQMQL TGGPRPYENS VCARRLMQYL
301: YHQRQRPSES SIVYWRKFVT EYFSPRAKKR WCLSHYDNVG HSALGVSPQA ATDEWQCDLC GSKSGRGFEA TFDVLPRLNE IKFASGVLDE LLYLGVPSER
401: RYGSGIMVLE YGKAVQESVY EHIRVVREGH LRIIFSQELK ILSWEFCTRR HEELLPRRLV APQVNQLLQV AEKCQSTIDQ SGSDGIHQQD LQANSNMVMA
501: AGRQLAKSLE SHSLNDLGFS KRYVRCLQIS EVVSSMKDMI DFCRDQKVGP IEALKSYPYR MKAGKPQMQE MEQLAAARGL PPDRNSLNKL MALRNSGINI
601: PMNNMSGQGS LPGSAQAAAF ALTNYQSMLM KQNHLNSDLN NTTIQQEPSR NRSASPSYQG TSPLLPGFVH SPSISGVSSH LSPQRQMPSS SYNGSTQQYH
701: QQPPSCSSGN QTLEQQMIHQ IWQQMANSNG GSGQQQQSLS GQNMMNCNTN MGRNRTDYVP AAAETPSTSN RFRGIKGLDQ SQNLEGIISN TSLNFGNNGV
801: FSNEVDESMG GYSWKS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.