Factsheet for PGSC0003DMT400037024

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 5
plastid 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400012712
PGSC0003DMT400018339
PGSC0003DMT400020194
PGSC0003DMT400032280
PGSC0003DMT400052607
PGSC0003DMT400068261

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62090.1	PGSC0003DMT400018339	AT3G44720.1	21798944
AT5G62090.1	PGSC0003DMT400068261	AT3G44720.1	21798944
AT5G62090.1	PGSC0003DMT400020194	AT3G58630.1	21798944
AT5G62090.1	PGSC0003DMT400052607	AT3G58630.1	21798944
AT5G62090.1	PGSC0003DMT400012712	AT4G08150.1	21798944
AT5G62090.1	PGSC0003DMT400032280	AT5G53950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g026190.2.1	Tomato	plastid	58.19	94.5
KRG88471	Soybean	nucleus, plastid	33.84	72.43
KRH38603	Soybean	plastid	39.41	67.98
VIT_16s0100g00500.t01	Wine grape	plastid	59.72	63.31
KRH38604	Soybean	nucleus	54.91	62.25
KRH09131	Soybean	nucleus, plastid	58.19	61.33
KRH09132	Soybean	plastid	56.66	59.04
CDY30691	Canola	nucleus	43.12	52.11
AT5G62090.1	Thale cress	nucleus	45.63	51.23
CDY52362	Canola	nucleus	37.12	49.42
CDY54085	Canola	nucleus, plastid	37.66	48.94
GSMUA_Achr1P16220_001	Banana	nucleus	37.34	48.93
AT4G25515.1	Thale cress	nucleus, plastid	36.24	48.47
CDY50201	Canola	nucleus, plastid	36.03	48.39
Bra019159.1-P	Field mustard	nucleus, plastid	36.03	48.39
CDX92713	Canola	nucleus, plastid	36.14	48.18
Bra029289.1-P	Field mustard	nucleus	34.72	48.11
CDY57709	Canola	nucleus, plastid	25.55	47.56
GSMUA_Achr7P05870_001	Banana	nucleus	14.85	47.55
CDX89417	Canola	nucleus	19.98	47.53
GSMUA_Achr10P...	Banana	nucleus	38.54	45.55
AT4G25520.1	Thale cress	plastid	36.68	44.92
GSMUA_Achr1P07930_001	Banana	nucleus	38.76	44.71
Bra010458.1-P	Field mustard	nucleus, plastid	29.26	44.44
CDX92714	Canola	cytosol	25.44	43.8
Bra013897.1-P	Field mustard	nucleus	18.78	43.11
GSMUA_Achr2P03310_001	Banana	nucleus	35.26	40.02
KXG34470	Sorghum	nucleus, plastid	31.77	39.43
Os06t0126000-02	Rice	cytosol, nucleus	34.5	38.44
TraesCS7B01G437100.1	Wheat	plastid	33.84	38.41
TraesCS7A01G520700.1	Wheat	nucleus	33.62	38.17
Zm00001d018890_P006	Maize	nucleus, plastid	31.33	38.11
Zm00001d045516_P006	Maize	nucleus, plastid	32.1	37.94
KXG19170	Sorghum	plastid	32.31	37.9
Zm00001d035990_P002	Maize	plastid	32.21	37.82
HORVU7Hr1G115870.4	Barley	plastid	32.75	37.27
TraesCS7D01G510400.2	Wheat	nucleus	33.73	35.56
TraesCS7D01G146100.2	Wheat	nucleus, plastid	32.1	34.92
TraesCS7B01G047100.4	Wheat	plastid	32.31	34.78
TraesCS7A01G144600.3	Wheat	nucleus, plastid	32.31	34.62
HORVU7Hr1G010050.2	Barley	nucleus, plastid	32.97	34.51
TraesCS7D01G050000.5	Wheat	nucleus, plastid	31.88	34.07
HORVU7Hr1G029650.10	Barley	plastid	32.1	33.64
TraesCS4A01G441500.1	Wheat	nucleus, plastid	31.66	33.6
TraesCS7A01G054900.2	Wheat	nucleus, plastid	31.66	33.07
PGSC0003DMT400092079	Potato	nucleus	14.74	18.27

Protein Annotations

EnsemblPlants:PGSC0003DMT400037024	EnsemblPlantsGene:PGSC0003DMG400014269	EntrezGene:102584857	InterPro:LIM-bd/SEUSS	PANTHER:PTHR10378	PANTHER:PTHR10378:SF12
PFAM:PF01803	PGSC:PGSC0003DMG400014269	RefSeq:XP_006353358.1	RefSeq:XP_015166797.1	RefSeq:XP_015166798.1	SEG:seg
UniParc:UPI000296DF9F	UniProt:M1B4P0	MapMan:35.1	:	:	:

Description

SEU1 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400014269]

Coordinates

chr3:+:42252018..42259999

Molecular Weight (calculated)

98962.8 Da

IEP (calculated)

8.369

GRAVY (calculated)

-0.580

Length

916 amino acids

Sequence
(BLAST)

001: MAPSRVAGGM AHSSSSSGIF FQGDGQSQVA GNSHLTSSFG NSSNSLPGNV RSSLGPLSGD VSNTVLNSVA SSGPSVGASS LVTDANSGLS GGPNLQRSAS
101: INTESYMRLP ASPLSFSSNN ISVSGSSVMD GSSVAQQSSN QDPNSQQPQH NQQRHGTSSA TSLPTSRVGQ VQLGSGQGLR VPGSFIQDPA ALSQMQKKPR
201: LDIKQDDVMQ QQVLQQLLQR QDPVHMQNPS PQLQALVQQQ RLRQQQQQQH QLLQYLPPLQ RAQLLQQQQQ LQLRQQMQQQ SVQPVSGMKR PSDGVLCSRR
301: LMQYLYHQRQ RPSDNSIAYW RKFVSEYYSP RAKKRWCLSL YENVGHHSLG VFPQSTMDAW HCDICGSKSG RGFEATFEVL PRLNEIKFSS GVIDELLFLD
401: FPRECRFPSG LMMLEYAKAV QESVYEQLRV VREGRLRIIF TSDLKILSWE FCARRHEELL PRRLVAPQVN QLLQVAQKCQ STLTETGPDG VSQEDLQANS
501: NMVVTTGRQL AKSLELQSLN DLGFSKRYVR CLQIAEVVNS MKDLMDFCSE HKAGSIEGLK SFPRHDNTAK FQMQNIQETE QQVGNIQGLP TDRSALNKLM
601: ALHPGLNNQI SNNQHMGGRG ALSGSGQAAL SLSNFQNSLM RQNSMNSNTN PTQQDASSSF NNSNHSQSSL LQGPNGMLPG TVQNLPVSGL SSTNLQQQQQ
701: QLLSSGLLSQ NQSQSSQGSQ ALQQQMIQQL LQDMNTNNGG SGVQQQCLSG QSGGGSASRE GLAFGNNGSG VQQQCLSGQS GGGSASREGL AFGNNGSIAA
801: ATSSHGPGSS LGPTPGRIYS FKSASNCEPS ALAGNSGFSQ KAPDLARSYS FKSASNCEPS SSAGNSGFSR KGPDLPPSMH VSDDDILTPE MVQEFAENGF
901: LSSDLDNNMS YPGWKG

Best Arabidopsis Sequence Match ( AT5G62090.3 )
(BLAST)

001: MASSTSGIFF QGDDESQSFI NSHLTSSYGN SSNSAPGCGG PTGGYHNLSM VSGDMHNPVM MSVSTPGPSA GASSLVTDAN SGLSGGGPHL QRSASINNES
101: YMRLPASPMS FSSNNISISG SSVVDGSTVV QRHDPSVQLG GSSATSLPTS QTNQIPLSMA RRASESFFQD PNNLTQARKK PRLDSKQDDA LQQQILRQWL
201: QRQDILQQQQ QQQQQGQNPQ FQILLQQQKL RQQQQYLQSL PPLQRVQLQQ QQQVQQQQQL QQQHQQQQQQ LQQQGMQMQL TGGPRPYENS VCARRLMQYL
301: YHQRQRPSES SIVYWRKFVT EYFSPRAKKR WCLSHYDNVG HSALGVSPQA ATDEWQCDLC GSKSGRGFEA TFDVLPRLNE IKFASGVLDE LLYLGVPSER
401: RYGSGIMVLE YGKAVQESVY EHIRVVREGH LRIIFSQELK ILSWEFCTRR HEELLPRRLV APQVNQLLQV AEKCQSTIDQ SGSDGIHQQD LQANSNMVMA
501: AGRQLAKSLE SHSLNDLGFS KRYVRCLQIS EVVSSMKDMI DFCRDQKVGP IEALKSYPYR MKAGKPQMQE MEQLAAARGL PPDRNSLNKL MALRNSGINI
601: PMNNMSGQGS LPGSAQAAAF ALTNYQSMLM KQNHLNSDLN NTTIQQEPSR NRSASPSYQG TSPLLPGFVH SPSISGVSSH LSPQRQMPSS SYNGSTQQYH
701: QQPPSCSSGN QTLEQQMIHQ IWQQMANSNG GSGQQQQSLS GQNMMNCNTN MGRNRTDYVP AAAETPSTSN RFRGIKGLDQ SQNLEGIISN TSLNFGNNGV
801: FSNEVDESMG GYSWKS

Arabidopsis Description

SLK2Probable transcriptional regulator SLK2 [Source:UniProtKB/Swiss-Prot;Acc:Q94BP0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.