CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH22042
KRH22283
KRH22725
KRH25168
KRH26232
KRH26581
KRH27047
KRH27280
KRH30513
KRH55187
KRH61471

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62090.1	KRH22725	AT3G44720.1	21798944
AT5G62090.1	KRH25168	AT3G44720.1	21798944
AT5G62090.1	KRH26581	AT3G44720.1	21798944
AT5G62090.1	KRH30513	AT3G44720.1	21798944
AT5G62090.1	KRH22283	AT3G58630.1	21798944
AT5G62090.1	KRH27047	AT3G58630.1	21798944
AT5G62090.1	KRH61471	AT4G08150.1	21798944
AT5G62090.1	KRH22042	AT5G53950.1	21798944
AT5G62090.1	KRH26232	AT5G53950.1	21798944
AT5G62090.1	KRH27280	AT5G53950.1	21798944
AT5G62090.1	KRH55187	AT5G53950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG88471	Soybean	nucleus, plastid	64.41	79.91
Solyc03g026190.2.1	Tomato	plastid	66.86	62.94
KRH38604	Soybean	nucleus	81.17	53.34
KRH09131	Soybean	nucleus, plastid	85.69	52.36
KRH09132	Soybean	plastid	80.79	48.81
GSMUA_Achr7P05870_001	Banana	nucleus	25.99	48.25
VIT_16s0100g00500.t01	Wine grape	plastid	73.07	44.91
PGSC0003DMT400037024	Potato	plastid	67.98	39.41
AT5G62090.1	Thale cress	nucleus	57.44	37.38
CDY30691	Canola	nucleus	51.79	36.28
CDY57709	Canola	nucleus, plastid	33.15	35.77
CDX92713	Canola	nucleus, plastid	44.07	34.06
GSMUA_Achr1P16220_001	Banana	nucleus	44.82	34.05
CDX89417	Canola	nucleus	24.67	34.03
CDY50201	Canola	nucleus, plastid	43.69	34.02
Bra019159.1-P	Field mustard	nucleus, plastid	43.69	34.02
AT4G25515.1	Thale cress	nucleus, plastid	43.69	33.87
CDY54085	Canola	nucleus, plastid	44.82	33.76
CDY52362	Canola	nucleus	43.69	33.72
AT4G25520.1	Thale cress	plastid	44.63	31.68
Bra029289.1-P	Field mustard	nucleus	38.61	31.01
GSMUA_Achr1P07930_001	Banana	nucleus	45.95	30.73
GSMUA_Achr10P...	Banana	nucleus	44.82	30.71
CDX92714	Canola	cytosol	30.7	30.64
KXG19170	Sorghum	plastid	42.56	28.94
Zm00001d045516_P006	Maize	nucleus, plastid	41.62	28.52
GSMUA_Achr2P03310_001	Banana	nucleus	42.94	28.25
Zm00001d035990_P002	Maize	plastid	41.43	28.21
TraesCS7B01G437100.1	Wheat	plastid	42.75	28.13
HORVU7Hr1G115870.4	Barley	plastid	42.37	27.95
TraesCS7A01G520700.1	Wheat	nucleus	42.37	27.88
KXG34470	Sorghum	nucleus, plastid	38.04	27.37
Os06t0126000-02	Rice	cytosol, nucleus	42.18	27.25
Bra013897.1-P	Field mustard	nucleus	20.34	27.07
Bra010458.1-P	Field mustard	nucleus, plastid	30.32	26.7
TraesCS7D01G510400.2	Wheat	nucleus	42.37	25.89
Zm00001d018890_P006	Maize	nucleus, plastid	36.53	25.76
TraesCS7D01G146100.2	Wheat	nucleus, plastid	40.3	25.42
TraesCS7A01G144600.3	Wheat	nucleus, plastid	40.49	25.15
TraesCS7B01G047100.4	Wheat	plastid	40.11	25.03
HORVU7Hr1G029650.10	Barley	plastid	40.68	24.71
TraesCS7D01G050000.5	Wheat	nucleus, plastid	39.74	24.62
TraesCS4A01G441500.1	Wheat	nucleus, plastid	39.74	24.45
HORVU7Hr1G010050.2	Barley	nucleus, plastid	39.92	24.23
TraesCS7A01G054900.2	Wheat	nucleus, plastid	39.36	23.83
KRH64564	Soybean	nucleus, plastid	32.58	18.99
KRH18102	Soybean	plastid	33.15	18.97
KRH15928	Soybean	nucleus, plastid	31.64	18.36
KRH53367	Soybean	nucleus	32.96	18.21

Protein Annotations

EMBL:ACUP02005854	EnsemblPlants:KRH38603	EnsemblPlantsGene:GLYMA_09G146100	InterPro:LIM-bd/SEUSS	PANTHER:PTHR10378	PANTHER:PTHR10378:SF12
PFAM:PF01803	ProteinID:KRH38603	ProteinID:KRH38603.1	SEG:seg	UniParc:UPI0006ED6303	UniProt:A0A0R0IFU3
MapMan:35.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:36227805..36232303

Molecular Weight (calculated)

59310.4 Da

IEP (calculated)

9.569

GRAVY (calculated)

-0.458

Length

531 amino acids

Sequence
(BLAST)

001: MTPSRVSGSL TRSSSHSGIF FQGDGQSQNI VNSHLSSSFV NSSSTVPGAG CSNLGPVSGD INNAVLNTVT NSAPSVGASS LVTDANSALS SGPHLQRSAS
101: VNTDSYLRLP ASPMSFTLNN ISISGSSVMD GSSVQNQQQP QGASSATSLP ASQTRPSLLQ MGAQVPRSFI QDPNNMSHLS KKPRMDIKQE DIMQQQVIQQ
201: ILQRQDSMQF QGRNPQLQAF LQQQQRLRQQ QIFQSMPQLQ RAHLQQQRQQ LQQQVMQPSS AGKRPYDSGV SGVCARRLMQ YLYHQRQRPN DNSIAYWIKF
301: VAEYYSPRAK KRWCLSLYSN VGHHALGVFP QAAMDAWQCD ICGSKSGRGF EATYEVLPRL NEIKFGSGVI DELLFLDLPR ETRFPSGAMM LEYAKAVQES
401: VYESLRVVRE GQLRIIFTQD LKILSWEFCA RRHEELLPRR LVAPQVNQLI QVAQKCQSTI AESGADWVSQ QDLQTNSNIP PNLSQKNDDL EPVHRWIVMK
501: FDYHVRNPIP NILSVGNFKI ISELREKPFA L

Best Arabidopsis Sequence Match ( AT5G62090.3 )
(BLAST)

001: MASSTSGIFF QGDDESQSFI NSHLTSSYGN SSNSAPGCGG PTGGYHNLSM VSGDMHNPVM MSVSTPGPSA GASSLVTDAN SGLSGGGPHL QRSASINNES
101: YMRLPASPMS FSSNNISISG SSVVDGSTVV QRHDPSVQLG GSSATSLPTS QTNQIPLSMA RRASESFFQD PNNLTQARKK PRLDSKQDDA LQQQILRQWL
201: QRQDILQQQQ QQQQQGQNPQ FQILLQQQKL RQQQQYLQSL PPLQRVQLQQ QQQVQQQQQL QQQHQQQQQQ LQQQGMQMQL TGGPRPYENS VCARRLMQYL
301: YHQRQRPSES SIVYWRKFVT EYFSPRAKKR WCLSHYDNVG HSALGVSPQA ATDEWQCDLC GSKSGRGFEA TFDVLPRLNE IKFASGVLDE LLYLGVPSER
401: RYGSGIMVLE YGKAVQESVY EHIRVVREGH LRIIFSQELK ILSWEFCTRR HEELLPRRLV APQVNQLLQV AEKCQSTIDQ SGSDGIHQQD LQANSNMVMA
501: AGRQLAKSLE SHSLNDLGFS KRYVRCLQIS EVVSSMKDMI DFCRDQKVGP IEALKSYPYR MKAGKPQMQE MEQLAAARGL PPDRNSLNKL MALRNSGINI
601: PMNNMSGQGS LPGSAQAAAF ALTNYQSMLM KQNHLNSDLN NTTIQQEPSR NRSASPSYQG TSPLLPGFVH SPSISGVSSH LSPQRQMPSS SYNGSTQQYH
701: QQPPSCSSGN QTLEQQMIHQ IWQQMANSNG GSGQQQQSLS GQNMMNCNTN MGRNRTDYVP AAAETPSTSN RFRGIKGLDQ SQNLEGIISN TSLNFGNNGV
801: FSNEVDESMG GYSWKS

Arabidopsis Description

SLK2Probable transcriptional regulator SLK2 [Source:UniProtKB/Swiss-Prot;Acc:Q94BP0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.