CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91929
KRH22725
KRH25168
KRH26581
KRH30513
KRH34848
KRH39527
KRH45468
KRH45469
KRH74431
KRH75634

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G44720.1	KRH22725	AT3G44720.1	21798944
AT3G44720.1	KRH25168	AT3G44720.1	21798944
AT3G44720.1	KRH26581	AT3G44720.1	21798944
AT3G44720.1	KRH30513	AT3G44720.1	21798944
AT3G44720.1	KRG91929	AT3G54826.1	21798944
AT3G44720.1	KRH34848	AT3G54826.1	21798944
AT3G44720.1	KRH39527	AT5G65683.1	21798944
AT3G44720.1	KRH45468	AT5G65683.1	21798944
AT3G44720.1	KRH45469	AT5G65683.1	21798944
AT3G44720.1	KRH74431	AT5G65683.1	21798944
AT3G44720.1	KRH75634	AT5G65683.1	21798944
AT5G22630.1	KRH22725	AT3G44720.1	21798944
AT5G22630.1	KRH25168	AT3G44720.1	21798944
AT5G22630.1	KRH26581	AT3G44720.1	21798944
AT5G22630.1	KRH30513	AT3G44720.1	21798944
AT5G22630.1	KRH22725	AT5G22630.1	21798944
AT5G22630.1	KRH25168	AT5G22630.1	21798944
AT5G22630.1	KRH26581	AT5G22630.1	21798944
AT5G22630.1	KRH30513	AT5G22630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22725	Soybean	plastid	96.0	96.23
VIT_06s0061g01300.t01	Wine grape	mitochondrion, plastid	83.53	86.37
KRH25168	Soybean	plastid	81.88	81.31
KRH30513	Soybean	plastid	81.65	81.07
GSMUA_Achr8P07590_001	Banana	cytosol	54.12	80.7
Solyc11g066890.1.1	Tomato	plastid	80.24	79.86
PGSC0003DMT400068261	Potato	plastid	80.71	79.21
PGSC0003DMT400018339	Potato	plastid	79.76	78.29
Solyc06g074530.1.1	Tomato	plastid	79.53	78.06
CDY30526	Canola	plastid	76.71	77.99
Bra034372.1-P	Field mustard	plastid	76.47	77.75
AT1G08250.1	Thale cress	plastid	75.29	77.48
AT2G27820.1	Thale cress	plastid	77.18	77.36
CDX77139	Canola	plastid	76.94	76.76
HORVU2Hr1G072210.1	Barley	cytosol, mitochondrion, plastid	63.53	76.27
CDY06307	Canola	cytosol	70.35	75.89
Bra031620.1-P	Field mustard	cytosol	69.88	75.38
Os09t0565700-01	Rice	plastid	70.12	74.31
AT5G22630.1	Thale cress	plastid	74.12	74.12
Os09t0566050-00	Rice	plastid	70.59	73.71
Zm00001d025333_P001	Maize	plastid	72.0	73.03
CDY26946	Canola	plastid	72.94	72.94
CDX92343	Canola	plastid	72.94	72.94
Bra002423.1-P	Field mustard	plastid	74.12	72.92
TraesCS2D01G290000.1	Wheat	plastid	70.82	72.71
TraesCS2A01G292000.1	Wheat	plastid	70.59	72.46
TraesCS2B01G308500.1	Wheat	plastid	70.59	72.46
Zm00001d003830_P001	Maize	plastid	72.24	72.07
CDY22691	Canola	cytosol	70.82	72.01
CDY59281	Canola	plastid	72.0	72.0
CDY09152	Canola	plastid	72.0	72.0
Zm00001d005351_P001	Maize	plastid	71.29	71.8
Bra020203.1-P	Field mustard	plastid	72.71	71.53
AT3G44720.1	Thale cress	plastid	71.06	71.23
Bra019468.1-P	Field mustard	plastid	64.47	70.98
TraesCS5B01G372500.1	Wheat	plastid	70.12	70.95
EES10725	Sorghum	plastid	72.0	70.83
TraesCS5A01G370200.1	Wheat	plastid	70.12	70.62
TraesCS5D01G379700.1	Wheat	plastid	70.12	70.45
Os04t0406600-01	Rice	plastid	72.24	70.41
CDY30932	Canola	plastid	63.76	70.21
EER96348	Sorghum	plastid	72.0	69.86
CDX77841	Canola	plastid	63.53	69.77
HORVU5Hr1G092190.1	Barley	plastid	69.88	69.72
TraesCS2B01G308400.1	Wheat	plastid	68.47	69.45
CDY72678	Canola	plastid	68.0	68.97
TraesCS2D01G289900.2	Wheat	plastid	67.29	68.75
Bra031619.1-P	Field mustard	plastid	67.76	68.74
CDY22692	Canola	plastid	67.53	68.5
GSMUA_AchrUn_...	Banana	plastid	63.76	68.09
GSMUA_Achr3P22810_001	Banana	plastid	61.88	67.26
GSMUA_Achr10P...	Banana	plastid	32.47	66.35
GSMUA_Achr8P33080_001	Banana	plastid	68.0	66.28
HORVU2Hr1G072180.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	67.53	62.39
TraesCS2A01G291900.1	Wheat	plastid	67.76	61.94
KRH22575	Soybean	cytosol	35.29	58.37
KRG89060	Soybean	plastid	50.82	56.1
KRH24944	Soybean	plastid	40.24	55.16
KRH26772	Soybean	plastid	48.0	53.12
KRH02054	Soybean	plastid	47.76	50.5
KRH36465	Soybean	plastid	44.94	47.28
KRG93965	Soybean	cytosol	7.06	36.59

Protein Annotations

KEGG:00400+4.2.1.51	EntrezGene:100797636	Gene3D:3.30.70.260	Gene3D:3.40.190.10	MapMan:4.1.5.2.4	InterPro:ACT_dom
EMBL:ACUP02007721	EnsemblPlantsGene:GLYMA_12G181800	GO:GO:0003674	GO:GO:0003824	GO:GO:0004664	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652
GO:GO:0009058	GO:GO:0009073	GO:GO:0009094	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570
GO:GO:0009987	GO:GO:0016829	GO:GO:0047769	UniProt:I1LTS0	InterPro:IPR001086	InterPro:IPR002912
EnsemblPlants:KRH26581	ProteinID:KRH26581	ProteinID:KRH26581.1	PFAM:PF00800	ScanProsite:PS00857	ScanProsite:PS00858
PFscan:PS51171	PFscan:PS51671	PANTHER:PTHR21022	PANTHER:PTHR21022:SF14	MetaCyc:PWY-7432	InterPro:Preph_deHydtase
InterPro:Preph_deHydtase_CS	SUPFAM:SSF53850	SUPFAM:SSF55021	UniParc:UPI000233D5DA	SEG:seg	:

Description

hypothetical protein

Coordinates

chr12:-:34248924..34251406

Molecular Weight (calculated)

46194.2 Da

IEP (calculated)

7.924

GRAVY (calculated)

-0.109

Length

425 amino acids

Sequence
(BLAST)

001: MQTLSPPTSN ALNLKHVLRP RRVAPSRIFV KCAFASEPAS YGVGSSRADW QSSCAILASK VVSQEQTSSA DQNGGTADHI AAVNGHKAAV SDLQLVPIGN
101: LAQANNKPLP PKPLTISDLS PAPMHGSKLR VAYQGVPGAY SEAAAGKAYP NCEAIPCDQF EVAFQAVELW IADRAVMPVE NSLGGSIHRN YDLLLRHRLH
201: IVGEVQLPVH HCLLALPGVR KEFLTRVISH PQALAQCEHT LTKLGLNVAR EAVDDTAGAA EFVATNNLRD TAAIASARAA ELYGLNVMAD GIQDDPSNVT
301: RFVMLAREPI IPRTDRPFKT SIVFAHDKGT SVLFKVLSAF AFRNISLTKI ESRPHRNRPI RLVDDANVGT AKHFEYLFYV DFEASMAEVR AQNALAEVQE
401: FTSFLRVLGS YPMDMTPWTP SSRGD

Best Arabidopsis Sequence Match ( AT1G08250.1 )
(BLAST)

001: MKALSSSSPI LGASQPATAT ALIARSGRSE WQSSCAILTS KVISQEESES LPVPPVSGGV DHLNGHNSAA ARVPGMNLVP IEKSDSNPLV PQHRHNPLKP
101: LSMTDLSPAP MHGSNLRVAY QGVPGAYSEA AAGKAYPNCQ AIPCDQFEVA FQAVELWIAD RAVLPVENSL GGSIHRNYDL LLRHRLHIVG EVQLPVHHCL
201: LALPGVRKEF LTRVISHPQG LAQCEHTLTK LGLNVAREAV DDTAGAAEFI ASNNLRDTAA IASARAAEIY GLEILEDGIQ DDVSNVTRFV MLAREPIIPR
301: TDRPFKTSIV FAHEKGTSVL FKVLSAFAFR DISLTKIESR PNHNRPIRVV DDANVGTAKH FEYMFYVDFE ASMAEARAQN ALAEVQEFTS FLRVLGSYPM
401: DMTPWSPTSS TSS

Arabidopsis Description

ADT6Arogenate dehydratase [Source:UniProtKB/TrEMBL;Acc:A0A178W954]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.