Factsheet for VIT_06s0061g01300.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 7
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH26581	Soybean	plastid	86.37	83.53
KRH22725	Soybean	plastid	85.16	82.55
GSMUA_Achr8P07590_001	Banana	cytosol	56.69	81.75
KRH30513	Soybean	plastid	81.51	78.27
CDY30526	Canola	plastid	79.32	77.99
KRH25168	Soybean	plastid	81.02	77.8
Bra034372.1-P	Field mustard	plastid	79.08	77.75
HORVU2Hr1G072210.1	Barley	cytosol, mitochondrion, plastid	66.18	76.84
AT1G08250.1	Thale cress	plastid	77.13	76.76
CDX77139	Canola	plastid	79.32	76.53
CDY06307	Canola	cytosol	72.99	76.14
Bra031620.1-P	Field mustard	cytosol	72.75	75.89
AT2G27820.1	Thale cress	plastid	77.62	75.24
Os09t0565700-01	Rice	plastid	72.51	74.31
Zm00001d025333_P001	Maize	plastid	75.43	73.99
TraesCS2D01G290000.1	Wheat	plastid	74.45	73.91
TraesCS2B01G308500.1	Wheat	plastid	74.45	73.91
TraesCS2A01G292000.1	Wheat	plastid	74.21	73.67
Os09t0566050-00	Rice	plastid	72.51	73.22
Zm00001d003830_P001	Maize	plastid	75.18	72.54
Zm00001d005351_P001	Maize	plastid	74.21	72.27
CDY22691	Canola	cytosol	73.48	72.25
EES10725	Sorghum	plastid	75.18	71.53
TraesCS5B01G372500.1	Wheat	plastid	72.75	71.19
Os04t0406600-01	Rice	plastid	75.43	71.1
HORVU5Hr1G092190.1	Barley	plastid	73.48	70.89
TraesCS5D01G379700.1	Wheat	plastid	72.75	70.69
TraesCS5A01G370200.1	Wheat	plastid	72.51	70.62
EER96348	Sorghum	plastid	74.94	70.32
TraesCS2B01G308400.1	Wheat	plastid	71.29	69.93
CDY72678	Canola	plastid	70.8	69.45
TraesCS2D01G289900.2	Wheat	plastid	70.07	69.23
Bra031619.1-P	Field mustard	plastid	70.32	68.97
CDY22692	Canola	plastid	70.32	68.97
GSMUA_AchrUn_...	Banana	plastid	66.42	68.59
GSMUA_Achr3P22810_001	Banana	plastid	64.48	67.77
GSMUA_Achr8P33080_001	Banana	plastid	70.8	66.74
GSMUA_Achr10P...	Banana	plastid	33.33	65.87
HORVU2Hr1G072180.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	70.07	62.61
TraesCS2A01G291900.1	Wheat	plastid	70.56	62.37
VIT_06s0004g03430.t01	Wine grape	plastid	53.77	56.96
VIT_10s0116g01670.t01	Wine grape	plastid	51.82	53.79
VIT_12s0059g00750.t01	Wine grape	plastid	51.58	53.67

Protein Annotations

KEGG:00400+4.2.1.51	EntrezGene:100267022	wikigene:100267022	Gene3D:3.30.70.260	Gene3D:3.40.190.10	MapMan:4.1.5.2.4
UniProt:A5BWG3	InterPro:ACT_dom	EMBL:AM473632	ProteinID:CAN68383	ProteinID:CAN68383.1	ProteinID:CCB44187
ProteinID:CCB44187.1	EMBL:FN594957	GO:GO:0003674	GO:GO:0003824	GO:GO:0004664	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652
GO:GO:0009058	GO:GO:0009073	GO:GO:0009094	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570
GO:GO:0009987	GO:GO:0016829	GO:GO:0047769	InterPro:IPR001086	InterPro:IPR002912	EntrezGene:LOC100267022
wikigene:LOC100267022	PFAM:PF00800	ScanProsite:PS00857	ScanProsite:PS00858	PFscan:PS51171	PFscan:PS51671
PANTHER:PTHR21022	PANTHER:PTHR21022:SF14	InterPro:Preph_deHydtase	InterPro:Preph_deHydtase_CS	SUPFAM:SSF53850	SUPFAM:SSF55021
UniParc:UPI0001521E0D	ArrayExpress:VIT_06s0061g01300	EnsemblPlantsGene:VIT_06s0061g01300	EnsemblPlants:VIT_06s0061g01300.t01	unigene:Vvi.13434	unigene:Vvi.1557
RefSeq:XP_002268701	RefSeq:XP_002268701.1	SEG:seg	:	:	:

Description

Arogenate dehydratase [Source:UniProtKB/TrEMBL;Acc:A5BWG3]

Coordinates

chr6:-:19128280..19129937

Molecular Weight (calculated)

45111.9 Da

IEP (calculated)

7.024

GRAVY (calculated)

-0.099

Length

411 amino acids

Sequence
(BLAST)

001: MQALSPSPNL KSLIRTRPLV PTHRVAPHRL VVQCVYKSDY SNFSGGVGFS RADWQSSCAI LASKVVSQQQ DTEKSGNADL TAVNGHKTLD LVPIENLPKP
101: LTITDLSPAP MHGSELRVAY QGVPGAYSEA AAGKAYPNCE AIPCDQFEVA FQAVELWIAD RAVLPVENSL GGSIHRNYDL LLRHRLHIVG EVQLPVHHCL
201: LALPGVRKEY LTRVISHPQA LAQCEHTLTK LGLNVAREAV DDTAGAAEYV ALNNLRDTAA IASARAADLY GLQILADGIQ DDSSNVTRFV MLAREPIIPR
301: TDRPFKTSIV FAHDKGTSVL FKVLSAFAFR NISLTKIESR PHRNRPIRLV DDANVGTAKH FEYMFYVDFE ASMAEVRAQN ALAEVQEFTS FLRVLGSYPM
401: DMTPWCPSGG D

Best Arabidopsis Sequence Match ( AT1G08250.1 )
(BLAST)

001: MKALSSSSPI LGASQPATAT ALIARSGRSE WQSSCAILTS KVISQEESES LPVPPVSGGV DHLNGHNSAA ARVPGMNLVP IEKSDSNPLV PQHRHNPLKP
101: LSMTDLSPAP MHGSNLRVAY QGVPGAYSEA AAGKAYPNCQ AIPCDQFEVA FQAVELWIAD RAVLPVENSL GGSIHRNYDL LLRHRLHIVG EVQLPVHHCL
201: LALPGVRKEF LTRVISHPQG LAQCEHTLTK LGLNVAREAV DDTAGAAEFI ASNNLRDTAA IASARAAEIY GLEILEDGIQ DDVSNVTRFV MLAREPIIPR
301: TDRPFKTSIV FAHEKGTSVL FKVLSAFAFR DISLTKIESR PNHNRPIRVV DDANVGTAKH FEYMFYVDFE ASMAEARAQN ALAEVQEFTS FLRVLGSYPM
401: DMTPWSPTSS TSS

Arabidopsis Description

ADT6Arogenate dehydratase [Source:UniProtKB/TrEMBL;Acc:A0A178W954]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.