CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30526	Canola	plastid	97.42	99.28
Bra034372.1-P	Field mustard	plastid	96.48	98.33
AT2G27820.1	Thale cress	plastid	88.73	89.15
CDY06307	Canola	cytosol	74.65	80.71
VIT_06s0061g01300.t01	Wine grape	mitochondrion, plastid	76.53	79.32
GSMUA_Achr8P07590_001	Banana	cytosol	52.35	78.25
KRH26581	Soybean	plastid	76.76	76.94
KRH22725	Soybean	plastid	75.82	76.18
CDY22691	Canola	cytosol	74.65	76.08
HORVU2Hr1G072210.1	Barley	cytosol, mitochondrion, plastid	61.97	74.58
CDX88512	Canola	plastid	21.83	73.81
CDY72678	Canola	plastid	71.83	73.03
Os09t0565700-01	Rice	plastid	68.54	72.82
CDY22692	Canola	plastid	70.89	72.08
KRH30513	Soybean	plastid	72.3	71.96
KRH25168	Soybean	plastid	72.3	71.96
Os09t0566050-00	Rice	plastid	68.08	71.25
Zm00001d025333_P001	Maize	plastid	69.01	70.17
TraesCS2D01G290000.1	Wheat	plastid	68.08	70.05
TraesCS2B01G308500.1	Wheat	plastid	68.08	70.05
TraesCS2A01G292000.1	Wheat	plastid	68.08	70.05
TraesCS5B01G372500.1	Wheat	plastid	69.01	70.0
TraesCS5A01G370200.1	Wheat	plastid	69.25	69.91
Zm00001d003830_P001	Maize	plastid	69.72	69.72
CDX92343	Canola	plastid	69.48	69.65
TraesCS5D01G379700.1	Wheat	plastid	69.01	69.5
CDY09152	Canola	plastid	69.01	69.18
CDY26946	Canola	plastid	69.01	69.18
HORVU5Hr1G092190.1	Barley	plastid	69.01	69.01
Zm00001d005351_P001	Maize	plastid	68.31	68.96
CDY59281	Canola	plastid	68.54	68.71
EES10725	Sorghum	plastid	69.48	68.52
TraesCS2B01G308400.1	Wheat	plastid	66.9	68.02
Os04t0406600-01	Rice	plastid	69.48	67.89
TraesCS2D01G289900.2	Wheat	plastid	65.73	67.31
EER96348	Sorghum	plastid	68.54	66.67
CDY30932	Canola	plastid	59.86	66.06
CDX77841	Canola	plastid	59.62	65.63
GSMUA_Achr3P22810_001	Banana	plastid	59.15	64.45
GSMUA_AchrUn_...	Banana	plastid	59.86	64.07
GSMUA_Achr8P33080_001	Banana	plastid	65.26	63.76
GSMUA_Achr10P...	Banana	plastid	30.75	62.98
HORVU2Hr1G072180.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	65.49	60.65
TraesCS2A01G291900.1	Wheat	plastid	65.96	60.43
CDX98196	Canola	extracellular	12.68	57.45
CDY28030	Canola	plastid	50.0	56.65
CDY35951	Canola	plastid	50.23	56.46
CDX74036	Canola	plastid	49.06	55.15
CDX75178	Canola	cytosol	8.92	55.07
CDY07984	Canola	plastid	48.12	54.09
CDY21012	Canola	mitochondrion	48.36	53.79
CDY31213	Canola	mitochondrion	47.89	53.4
CDY19368	Canola	cytosol	48.36	28.45

Protein Annotations

KEGG:00400+4.2.1.51	Gene3D:3.30.70.260	Gene3D:3.40.190.10	MapMan:4.1.5.2.4	GO:A0A078CM86	InterPro:ACT_dom
EnsemblPlants:CDX77139	ProteinID:CDX77139	ProteinID:CDX77139.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004664
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009094	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0047769
EnsemblPlantsGene:GSBRNA2T00127747001	InterPro:IPR001086	InterPro:IPR002912	PFAM:PF00800	ScanProsite:PS00857	ScanProsite:PS00858
PFscan:PS51171	PFscan:PS51671	PANTHER:PTHR21022	PANTHER:PTHR21022:SF14	MetaCyc:PWY-7432	InterPro:Preph_deHydtase
InterPro:Preph_deHydtase_CS	SUPFAM:SSF53850	SUPFAM:SSF55021	UniPathway:UPA00121	UniParc:UPI0004EDD39B	SEG:seg

Description

BnaC04g39340D

Coordinates

chrLK031809:+:1396541..1398140

Molecular Weight (calculated)

46430.1 Da

IEP (calculated)

7.203

GRAVY (calculated)

-0.138

Length

426 amino acids

Sequence
(BLAST)

001: MRTLLPSSPH NPMLRYSQTP ATVTASRRRF IHCGKRSDSS AVGSSRSDWQ SSWAILSSKV VSQEQSESLL SSVNGHSNGS AETSSLNLVP FDNNSLAPIQ
101: QSKKTTPLSI TDLSPAPMHG SNLRVAYQGV PGAYSEAAAG KAYPNCQAIP CDQFEVAFQA VELWIADRAV LPVENSLGGS IHRNYDLLLR HRLHIVGEVQ
201: LPVHHCLLAL PGVRKEFLTR VISHPQGLAQ CEHTLTKLGL NVAREAVDDT AGAAEFIAAN NVRDTAAIAS ARAAEIYGLE ILADGIQDDA SNVTRFVMLA
301: REPIIPRTDR PFKTSIVFAH EKGTCVLFKV LSAFAFRNIS LTKIESRPNH NVPIRLVDEA NVGTAKHFEY MFYVDFEASM AEARAQNALS EVQEFTSFLR
401: VLGSYPMDMT SWSPSPPSSS PSSLSL

Best Arabidopsis Sequence Match ( AT2G27820.1 )
(BLAST)

001: MRTLLPSHTP ATVTTAARRR HVIHCAGKRS DSFSINSSSS DWQSSCAILS SKVNSQEQSE SLSSNSNGSS SYHVSAVNGH NNGAGVSDLN LVPFNNNQSI
101: QSKKPLSISD LSPAPMHGSN LRVAYQGVPG AYSEAAAGKA YPNCQAIPCD QFEVAFQAVE LWIADRAVLP VENSLGGSIH RNYDLLLRHR LHIVGEVQLP
201: VHHCLIALPG VRKEFLTRVI SHPQGLAQCE HTLTKLGLNV AREAVDDTAG AAEFIAANNI RDTAAIASAR AAEIYGLEIL EDGIQDDASN VTRFVMLARE
301: PIIPRTDRPF KTSIVFAHEK GTCVLFKVLS AFAFRNISLT KIESRPNHNV PIRLVDEANV GTAKHFEYMF YIDFEASMAE SRAQNALSEV QEFTSFLRVL
401: GSYPMDMTSW SPSSSSSSSS TFSL

Arabidopsis Description

ADT3Arogenate dehydratase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUY3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.