CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034372.1-P	Field mustard	plastid	99.04	99.04
CDX77139	Canola	plastid	99.28	97.42
AT2G27820.1	Thale cress	plastid	90.67	89.39
CDY06307	Canola	cytosol	75.84	80.46
VIT_06s0061g01300.t01	Wine grape	mitochondrion, plastid	77.99	79.32
GSMUA_Achr8P07590_001	Banana	cytosol	53.59	78.6
KRH26581	Soybean	plastid	77.99	76.71
KRH22725	Soybean	plastid	77.03	75.94
CDY22691	Canola	cytosol	75.84	75.84
HORVU2Hr1G072210.1	Barley	cytosol, mitochondrion, plastid	63.16	74.58
CDX88512	Canola	plastid	22.25	73.81
CDY72678	Canola	plastid	73.44	73.27
Os09t0565700-01	Rice	plastid	69.86	72.82
CDY22692	Canola	plastid	72.49	72.31
KRH30513	Soybean	plastid	73.68	71.96
KRH25168	Soybean	plastid	73.68	71.96
Os09t0566050-00	Rice	plastid	69.38	71.25
Zm00001d025333_P001	Maize	plastid	70.33	70.17
TraesCS2D01G290000.1	Wheat	plastid	69.38	70.05
TraesCS2B01G308500.1	Wheat	plastid	69.38	70.05
TraesCS2A01G292000.1	Wheat	plastid	69.14	69.81
TraesCS5B01G372500.1	Wheat	plastid	70.1	69.76
TraesCS5A01G370200.1	Wheat	plastid	70.33	69.67
CDX92343	Canola	plastid	70.81	69.65
TraesCS5D01G379700.1	Wheat	plastid	70.1	69.27
Zm00001d003830_P001	Maize	plastid	70.57	69.25
Zm00001d005351_P001	Maize	plastid	69.86	69.19
CDY26946	Canola	plastid	70.33	69.18
CDY09152	Canola	plastid	70.33	69.18
HORVU5Hr1G092190.1	Barley	plastid	70.33	69.01
CDY59281	Canola	plastid	69.86	68.71
Os04t0406600-01	Rice	plastid	71.29	68.35
EES10725	Sorghum	plastid	70.33	68.06
TraesCS2B01G308400.1	Wheat	plastid	68.18	68.02
TraesCS2D01G289900.2	Wheat	plastid	66.99	67.31
EER96348	Sorghum	plastid	69.86	66.67
CDY30932	Canola	plastid	61.0	66.06
CDX77841	Canola	plastid	60.77	65.63
GSMUA_Achr3P22810_001	Banana	plastid	60.29	64.45
GSMUA_AchrUn_...	Banana	plastid	61.0	64.07
GSMUA_Achr8P33080_001	Banana	plastid	66.51	63.76
GSMUA_Achr10P...	Banana	plastid	31.34	62.98
HORVU2Hr1G072180.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	66.75	60.65
TraesCS2A01G291900.1	Wheat	plastid	67.22	60.43
CDX98196	Canola	extracellular	12.92	57.45
CDY28030	Canola	plastid	50.96	56.65
CDY35951	Canola	plastid	51.2	56.46
CDX74036	Canola	plastid	50.0	55.15
CDX75178	Canola	cytosol	9.09	55.07
CDY07984	Canola	plastid	49.04	54.09
CDY21012	Canola	mitochondrion	49.28	53.79
CDY31213	Canola	mitochondrion	48.8	53.4
CDY19368	Canola	cytosol	49.52	28.59

Protein Annotations

KEGG:00400+4.2.1.51	Gene3D:3.30.70.260	Gene3D:3.40.190.10	MapMan:4.1.5.2.4	GO:A0A078GYI2	UniProt:A0A078GYI2
InterPro:ACT_dom	EnsemblPlants:CDY30526	ProteinID:CDY30526	ProteinID:CDY30526.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004664	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009073	GO:GO:0009094	GO:GO:0009507
GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0016829	GO:GO:0047769	EnsemblPlantsGene:GSBRNA2T00045246001
InterPro:IPR001086	InterPro:IPR002912	PFAM:PF00800	ScanProsite:PS00857	ScanProsite:PS00858	PFscan:PS51171
PFscan:PS51671	PANTHER:PTHR21022	PANTHER:PTHR21022:SF14	MetaCyc:PWY-7432	InterPro:Preph_deHydtase	InterPro:Preph_deHydtase_CS
SUPFAM:SSF53850	SUPFAM:SSF55021	UniPathway:UPA00121	UniParc:UPI0004EECEB4	SEG:seg	:

Description

BnaA04g16070DArogenate dehydratase [Source:UniProtKB/TrEMBL;Acc:A0A078GYI2]

Coordinates

chrLK032254:-:241431..242968

Molecular Weight (calculated)

45611.1 Da

IEP (calculated)

7.387

GRAVY (calculated)

-0.128

Length

418 amino acids

Sequence
(BLAST)

001: MRTLLPSSPM LRYSQTPATV TASRRRFIHC GKRSDSSAVG SSRSDWQSSW AILSSKVVSQ EQSESLLSSV NGHSNGSLNL VPFDNNSLAP NQQSKKTTPL
101: SITDLSPAPM HGSNLRVAYQ GVPGAYSEAA AGKAYPNCQA IPCDQFEVAF QAVELWIADR AVLPVENSLG GSIHRNYDLL LRHRLHIVGE VQLPVHHCLL
201: ALPGVRKEFL TRVISHPQGL AQCEHTLTKL GLNVAREAVD DTAGAAEFIA ANNVRDTAAI ASARAAEIYG LEILADGIQD DASNVTRFVM LAREPIIPRT
301: DRPFKTSIVF AHEKGTCVLF KVLSAFAFRN ISLTKIESRP NHNVPIRLVD EANVGTAKHF EYMFYVDFEA SMAEARAQNA LSEVQEFTSF LRVLGSYPMD
401: MTSWSPSPPS SSSSTLSL

Best Arabidopsis Sequence Match ( AT2G27820.1 )
(BLAST)

001: MRTLLPSHTP ATVTTAARRR HVIHCAGKRS DSFSINSSSS DWQSSCAILS SKVNSQEQSE SLSSNSNGSS SYHVSAVNGH NNGAGVSDLN LVPFNNNQSI
101: QSKKPLSISD LSPAPMHGSN LRVAYQGVPG AYSEAAAGKA YPNCQAIPCD QFEVAFQAVE LWIADRAVLP VENSLGGSIH RNYDLLLRHR LHIVGEVQLP
201: VHHCLIALPG VRKEFLTRVI SHPQGLAQCE HTLTKLGLNV AREAVDDTAG AAEFIAANNI RDTAAIASAR AAEIYGLEIL EDGIQDDASN VTRFVMLARE
301: PIIPRTDRPF KTSIVFAHEK GTCVLFKVLS AFAFRNISLT KIESRPNHNV PIRLVDEANV GTAKHFEYMF YIDFEASMAE SRAQNALSEV QEFTSFLRVL
401: GSYPMDMTSW SPSSSSSSSS TFSL

Arabidopsis Description

ADT3Arogenate dehydratase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUY3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.