Factsheet for GSMUA_Achr1P16220_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr1P11500_001
GSMUA_Achr1P27460_001
GSMUA_Achr2P02250_001
GSMUA_Achr2P13200_001
GSMUA_Achr3P22810_001
GSMUA_Achr3P26230_001
GSMUA_Achr4P03120_001
GSMUA_Achr4P28270_001
GSMUA_Achr4P32230_001
GSMUA_Achr5P01960_001
GSMUA_Achr5P09160_001
GSMUA_Achr5P27050_001
GSMUA_Achr6P04640_001
GSMUA_Achr6P26840_001
GSMUA_Achr7P08050_001
GSMUA_Achr7P27540_001
GSMUA_Achr8P06630_001
GSMUA_Achr8P07590_001
GSMUA_Achr8P33080_001
GSMUA_Achr9P06410_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62090.1	GSMUA_Achr2P02250_001	AT2G47700.1	21798944
AT5G62090.1	GSMUA_Achr5P27050_001	AT2G47700.1	21798944
AT5G62090.1	GSMUA_Achr8P06630_001	AT2G47700.1	21798944
AT5G62090.1	GSMUA_Achr10P...	AT3G44720.1	21798944
AT5G62090.1	GSMUA_Achr3P22810_001	AT3G44720.1	21798944
AT5G62090.1	GSMUA_Achr8P07590_001	AT3G44720.1	21798944
AT5G62090.1	GSMUA_Achr8P33080_001	AT3G44720.1	21798944
AT5G62090.1	GSMUA_AchrUn_...	AT3G44720.1	21798944
AT5G62090.1	GSMUA_Achr1P11500_001	AT3G58630.1	21798944
AT5G62090.1	GSMUA_Achr1P27460_001	AT3G58630.1	21798944
AT5G62090.1	GSMUA_Achr5P09160_001	AT3G58630.1	21798944
AT5G62090.1	GSMUA_Achr6P26840_001	AT3G58630.1	21798944
AT5G62090.1	GSMUA_Achr9P06410_001	AT3G58630.1	21798944
AT5G62090.1	GSMUA_Achr10P...	AT4G08150.1	21798944
AT5G62090.1	GSMUA_Achr2P13200_001	AT4G08150.1	21798944
AT5G62090.1	GSMUA_Achr3P26230_001	AT4G08150.1	21798944
AT5G62090.1	GSMUA_Achr4P03120_001	AT4G08150.1	21798944
AT5G62090.1	GSMUA_Achr4P28270_001	AT4G08150.1	21798944
AT5G62090.1	GSMUA_Achr4P32230_001	AT4G08150.1	21798944
AT5G62090.1	GSMUA_Achr5P01960_001	AT4G08150.1	21798944
AT5G62090.1	GSMUA_Achr6P04640_001	AT4G08150.1	21798944
AT5G62090.1	GSMUA_Achr7P08050_001	AT4G08150.1	21798944
AT5G62090.1	GSMUA_Achr7P27540_001	AT4G08150.1	21798944
AT5G62090.1	GSMUA_Achr10P...	AT5G53950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG88471	Soybean	nucleus, plastid	33.05	53.97
GSMUA_Achr7P05870_001	Banana	nucleus	21.75	53.15
GSMUA_Achr1P07930_001	Banana	nucleus	56.08	49.37
Solyc03g026190.2.1	Tomato	plastid	39.2	48.58
GSMUA_Achr10P...	Banana	nucleus	52.93	47.74
KRH38603	Soybean	plastid	34.05	44.82
GSMUA_Achr2P03310_001	Banana	nucleus	49.36	42.75
KRH38604	Soybean	nucleus	48.35	41.83
VIT_16s0100g00500.t01	Wine grape	plastid	50.64	40.97
KRH09131	Soybean	nucleus, plastid	50.79	40.85
CDY57709	Canola	nucleus, plastid	28.18	40.04
CDX89417	Canola	nucleus	22.03	40.0
KRH09132	Soybean	plastid	49.5	39.36
Zm00001d035990_P002	Maize	plastid	43.35	38.85
KXG34470	Sorghum	nucleus, plastid	40.92	38.75
KXG19170	Sorghum	plastid	43.2	38.67
VIT_02s0025g04390.t01	Wine grape	vacuole	37.05	37.7
CDY30691	Canola	nucleus	40.77	37.6
Zm00001d045516_P006	Maize	nucleus, plastid	41.63	37.55
Bra019159.1-P	Field mustard	nucleus, plastid	36.62	37.54
CDY50201	Canola	nucleus, plastid	36.62	37.54
AT4G25515.1	Thale cress	nucleus, plastid	36.77	37.52
Bra013897.1-P	Field mustard	nucleus	21.32	37.34
PGSC0003DMT400037024	Potato	plastid	48.93	37.34
CDY52362	Canola	nucleus	36.62	37.21
CDX92713	Canola	nucleus, plastid	36.48	37.12
TraesCS7A01G520700.1	Wheat	nucleus	42.78	37.05
CDY54085	Canola	nucleus, plastid	37.34	37.02
CDX92714	Canola	cytosol	28.04	36.84
Zm00001d018890_P006	Maize	nucleus, plastid	39.63	36.79
Os06t0126000-02	Rice	cytosol, nucleus	43.2	36.74
TraesCS7B01G437100.1	Wheat	plastid	42.35	36.68
AT5G62090.1	Thale cress	nucleus	42.63	36.52
HORVU7Hr1G115870.4	Barley	plastid	41.06	35.65
Bra029289.1-P	Field mustard	nucleus	33.19	35.1
Bra010458.1-P	Field mustard	nucleus, plastid	30.19	34.99
TraesCS7D01G146100.2	Wheat	nucleus, plastid	41.63	34.56
TraesCS7B01G047100.4	Wheat	plastid	42.06	34.55
TraesCS7D01G510400.2	Wheat	nucleus	42.78	34.41
AT4G25520.1	Thale cress	plastid	36.62	34.22
TraesCS7A01G144600.3	Wheat	nucleus, plastid	41.63	34.04
TraesCS4A01G441500.1	Wheat	nucleus, plastid	40.92	33.14
TraesCS7D01G050000.5	Wheat	nucleus, plastid	40.49	33.02
HORVU7Hr1G010050.2	Barley	nucleus, plastid	41.2	32.91
TraesCS7A01G054900.2	Wheat	nucleus, plastid	41.2	32.84
HORVU7Hr1G029650.10	Barley	plastid	40.77	32.61
GSMUA_Achr6P18610_001	Banana	plastid	30.04	23.97
GSMUA_Achr2P20700_001	Banana	plastid	29.18	23.8
GSMUA_Achr3P02850_001	Banana	nucleus	29.47	22.99
GSMUA_Achr10P...	Banana	nucleus, plastid	28.76	22.87
GSMUA_Achr5P25900_001	Banana	nucleus	24.61	17.92

Protein Annotations

EnsemblPlants:GSMUA_Achr1P16220_001	EnsemblPlants:GSMUA_Achr1T16220_001	EnsemblPlantsGene:GSMUA_Achr1G16220_001	InterPro:LIM-bd/SEUSS	PANTHER:PTHR10378	PANTHER:PTHR10378:SF12
PFAM:PF01803	SEG:seg	UniParc:UPI000294D31B	UniProt:M0S0D0	MapMan:35.1	:

Description

transcriptional corepressor SEUSS, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr1G16220_001]

Coordinates

chr1:+:12125038..12133887

Molecular Weight (calculated)

77258.3 Da

IEP (calculated)

8.884

GRAVY (calculated)

-0.470

Length

699 amino acids

Sequence
(BLAST)

001: MTGNGRSGLG PVSGDMNPGV LNSTGNSSGP SVGASSLITD ANSALSGSSM MDGSVMQQSL HQEQACNKQG ASSATSEAMV QEPLNSTNTS KKARLDLKKD
101: GIMQQQVIQQ LLLRPDPVLQ GHQNPQLQAI LQQQRLAQLH QQHLMQSLPQ MQQSPITVQQ QQQQRHHMRQ HAVEAVAPVE RYVDSVIGSR RLMQYLFHQR
201: HRPAANSILY WRKFVTEYFA PLAKKRWCLS LYENIGNHAL GVFPQSAKDA WQCELCGLKS GKGFEATFEV LPRLFQIKFD RGLIDDNLFL GIPRECHLPS
301: GIIVLEYEKV VHESVYEHLR VAREGKLRVT FTPELKILCW DFCARRHEEF LPRRVLATQV NQLLQVAQKY QTTVNENGSA GVSHQDLQAS CNMFIAAGCQ
401: LAKSMEPQSL NELGFSKRYV RYLQISEVVN SMKDLIDFSQ EHRIGPIDSL KNYTSQATAK LQRQTLQDSG QLMAGAHSLP SDQSMLNKVM GIQSGLNNHM
501: NNNLVARRVL NSNQPSVLAL NNYHNLLRSS PNSNQSMLPQ EQLGLIGGPK QNNLHPSQVN QHLQQHVIQQ MLQQVINNNR GGLQQSVGAP NANGLVAPEV
601: PGGGITGVPV RMNPGSVGKG TEFLNMHGDM PNNSMGMVPS RSNSFKSVSS HPSISGNNLN SRADSTHNMD VPELGHIAKD FENGMFSGDP SDMGYGWKV

Best Arabidopsis Sequence Match ( AT5G62090.3 )
(BLAST)

001: MASSTSGIFF QGDDESQSFI NSHLTSSYGN SSNSAPGCGG PTGGYHNLSM VSGDMHNPVM MSVSTPGPSA GASSLVTDAN SGLSGGGPHL QRSASINNES
101: YMRLPASPMS FSSNNISISG SSVVDGSTVV QRHDPSVQLG GSSATSLPTS QTNQIPLSMA RRASESFFQD PNNLTQARKK PRLDSKQDDA LQQQILRQWL
201: QRQDILQQQQ QQQQQGQNPQ FQILLQQQKL RQQQQYLQSL PPLQRVQLQQ QQQVQQQQQL QQQHQQQQQQ LQQQGMQMQL TGGPRPYENS VCARRLMQYL
301: YHQRQRPSES SIVYWRKFVT EYFSPRAKKR WCLSHYDNVG HSALGVSPQA ATDEWQCDLC GSKSGRGFEA TFDVLPRLNE IKFASGVLDE LLYLGVPSER
401: RYGSGIMVLE YGKAVQESVY EHIRVVREGH LRIIFSQELK ILSWEFCTRR HEELLPRRLV APQVNQLLQV AEKCQSTIDQ SGSDGIHQQD LQANSNMVMA
501: AGRQLAKSLE SHSLNDLGFS KRYVRCLQIS EVVSSMKDMI DFCRDQKVGP IEALKSYPYR MKAGKPQMQE MEQLAAARGL PPDRNSLNKL MALRNSGINI
601: PMNNMSGQGS LPGSAQAAAF ALTNYQSMLM KQNHLNSDLN NTTIQQEPSR NRSASPSYQG TSPLLPGFVH SPSISGVSSH LSPQRQMPSS SYNGSTQQYH
701: QQPPSCSSGN QTLEQQMIHQ IWQQMANSNG GSGQQQQSLS GQNMMNCNTN MGRNRTDYVP AAAETPSTSN RFRGIKGLDQ SQNLEGIISN TSLNFGNNGV
801: FSNEVDESMG GYSWKS

Arabidopsis Description

SLK2Probable transcriptional regulator SLK2 [Source:UniProtKB/Swiss-Prot;Acc:Q94BP0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.