CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52362	Canola	nucleus	87.52	89.68
Bra010458.1-P	Field mustard	nucleus, plastid	68.94	80.6
CDX92713	Canola	nucleus, plastid	71.63	73.51
AT4G25515.1	Thale cress	nucleus, plastid	70.5	72.55
CDY50201	Canola	nucleus, plastid	70.07	72.43
CDX89417	Canola	nucleus	36.74	67.27
AT4G25520.1	Thale cress	plastid	68.65	64.71
CDY57709	Canola	nucleus, plastid	43.55	62.4
CDX92714	Canola	cytosol	40.99	54.32
KRG88471	Soybean	nucleus, plastid	32.2	53.04
Solyc03g026190.2.1	Tomato	plastid	38.44	48.05
KRH38603	Soybean	plastid	33.76	44.82
KRH38604	Soybean	nucleus	47.94	41.83
KRH09131	Soybean	nucleus, plastid	51.49	41.77
VIT_16s0100g00500.t01	Wine grape	plastid	50.35	41.09
CDY30691	Canola	nucleus	43.97	40.9
KRH09132	Soybean	plastid	49.36	39.59
PGSC0003DMT400037024	Potato	plastid	48.94	37.66
GSMUA_Achr1P16220_001	Banana	nucleus	37.02	37.34
CDY67669	Canola	mitochondrion, nucleus	11.91	35.29
KXG34470	Sorghum	nucleus, plastid	36.88	35.23
GSMUA_Achr1P07930_001	Banana	nucleus	39.15	34.76
GSMUA_Achr10P...	Banana	nucleus	37.87	34.45
GSMUA_Achr7P05870_001	Banana	nucleus	13.48	33.22
Zm00001d018890_P006	Maize	nucleus, plastid	35.46	33.2
KXG19170	Sorghum	plastid	36.31	32.78
Zm00001d045516_P006	Maize	nucleus, plastid	36.03	32.77
TraesCS7A01G520700.1	Wheat	nucleus	37.16	32.47
TraesCS7B01G437100.1	Wheat	plastid	36.88	32.22
Zm00001d035990_P002	Maize	plastid	35.46	32.05
Os06t0126000-02	Rice	cytosol, nucleus	37.16	31.87
HORVU7Hr1G115870.4	Barley	plastid	34.75	30.43
TraesCS7D01G510400.2	Wheat	nucleus	37.3	30.26
GSMUA_Achr2P03310_001	Banana	nucleus	32.91	28.75
TraesCS7D01G146100.2	Wheat	nucleus, plastid	34.33	28.74
TraesCS7D01G050000.5	Wheat	nucleus, plastid	34.47	28.35
TraesCS7A01G144600.3	Wheat	nucleus, plastid	34.33	28.3
HORVU7Hr1G010050.2	Barley	nucleus, plastid	35.04	28.23
TraesCS7B01G047100.4	Wheat	plastid	34.04	28.2
TraesCS4A01G441500.1	Wheat	nucleus, plastid	34.33	28.04
HORVU7Hr1G029650.10	Barley	plastid	34.75	28.03
TraesCS7A01G054900.2	Wheat	nucleus, plastid	34.61	27.82
CDY14963	Canola	nucleus, plastid	27.23	26.02
CDY40943	Canola	nucleus, plastid	28.37	25.84
CDY70167	Canola	cytosol, mitochondrion, nucleus	8.37	20.77
CDY69476	Canola	nucleus	5.11	13.19

Protein Annotations

EnsemblPlants:CDY54085	EnsemblPlantsGene:GSBRNA2T00013333001	InterPro:LIM-bd/SEUSS	PANTHER:PTHR10378	PANTHER:PTHR10378:SF12	PFAM:PF01803
ProteinID:CDY54085	ProteinID:CDY54085.1	SEG:seg	UniParc:UPI0004EC59F1	UniProt:A0A078ISK8	MapMan:35.1

Description

BnaC08g47250DBnaC08g47250D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ISK8]

Coordinates

chrLK033275:+:38593..42338

Molecular Weight (calculated)

78837.2 Da

IEP (calculated)

8.957

GRAVY (calculated)

-0.756

Length

705 amino acids

Sequence
(BLAST)

001: MNKPGVDSTT DGAGHEALNL QRSSGINNMR IPTPPQMSFS SNNINIPGSL VLDGSASMQQ HLSQQQQQQQ AGQSSVPMRE NDYSHVDKKP RIEVKQEGML
101: QQQIFQQLIQ RQDPTGRNTQ LQALLQQQRL RQQQQILQSM SPSQRLQLQQ QQLRQQLQQP GGTQQIPPNV RPYDVGVCAR KMMMYLYHLQ QRPAENCISY
201: WRKFVAEYFS PRAKQRLCLS QYESAGHHAL GMFQQAAPDM WQCDLCSTKS GKGFEATFDV LARLIEIKFA SGIIDELLYL DHPREHRFTN GLMMLEYRKA
301: VQETVHEQFR VVREGHLRII FSQDLKILTW EFCARRHEEL LLRRLIAPQV NQLLQVAQKC QSTISESGSE GVSQQDLQSN SNMVLGAGRQ LAKFMELQSL
401: NDLGYPKRYI RTLQISEVVK SMKDLMNFTG EHKVGPIEGL RRLLEQTATA KLQRQKVQEM EHMGNSGAMN GSAQAQMALT PGTMNGLIGN NNSSNSNNHH
501: QLVGRGAMNG SAQAAAALTN YQSMLMRQNA MNNPNSNAVK EEGFSTQNPT QSPSSSSHQR QSLATPGFPS SPQMQQQQQQ QQQRNMNGPP HHLQPPHSHG
601: NNQGQQMLNQ LLQEISENGP SLQQQQAFSG QSGGGNNNAE RNPAASTSSI SGGGGGRVPS RNNSFKAVVS NNNNHHLPED LSIPELSHDF SEDAFFNNSD
701: IYGSL

Best Arabidopsis Sequence Match ( AT4G25520.1 )
(BLAST)

001: MNRTVVSGAV ESSFSLTDAV GTEALNMQRS SGINNNMRIP TSPMSFSSNS VNIPGSLVLD GSAASMQHLP QQQQQQLLQQ QTGQGSVPMR ENNYSHVDKK
101: PRLEVKQEDM LQQQILQQLI QRQDPTGRNP QMQALLQQQR LRQHQQMLQS MSPSQRLQLQ QQQQLRQQLQ QQGTQQIPPN VRPYEVGVCA RKLMMYLYHL
201: QQRPAENCIT YWRKFVAEYF SPRAKQRLCL SQYESAGHHA LGMFPQAAPD MWQCDLCGTK SGKGFEATFD VLARLIEIKF ASGIIDELLY LDHPRENRFP
301: NGLMMLEYRK AVQETVHEQF RVVREGHLRI IFSQDLKILS WEFCARRHEE LLLRRLIAPQ VNQLLQVAQK CQSTISESGS EGVSQQDLQS NSNMVLGAGR
401: QLAKFMELQS LNDLGYPKRY IRTLQISEVV KSMKDLMNFT GEQKIGPIEG LKRLLEQTVT VKLQKQKMQE MEQFGNNGAI NGPVQAQMVL TSGTMNGSTG
501: NNTNNHHQIV GRGAMSGPAE GQMVISSGTV SGATANNNSN NHNQIVGRGA MNGSAQAAAA LTNYQSMLMR QNAMNNPNSN TGKQEGFSSQ NPTPNSNQSP
601: SSSSQQRHNL VTGGFPNSPQ MQQQQRTMNG PTNILPQNHP HQLQSPHSHG NTPEQQMLHQ LLQEMSENGG SVQQQQAFSG QSGSNSNAER NTTASTSNIS
701: GGGRAPSRNN SFKAASNNNL HFSEDISITD HDFSEDGFFN NNDIYGGL

Arabidopsis Description

SLK1Probable transcriptional regulator SLK1 [Source:UniProtKB/Swiss-Prot;Acc:Q0WVM7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.