Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY70167 | Canola | cytosol, mitochondrion, nucleus | 30.77 | 29.58 |
| CDY14963 | Canola | nucleus, plastid | 61.54 | 22.76 |
| CDY40943 | Canola | nucleus, plastid | 31.14 | 10.98 |
| TraesCS4D01G101500.1 | Wheat | nucleus, plastid | 26.37 | 7.93 |
| TraesCS4B01G104300.1 | Wheat | nucleus, plastid | 26.37 | 7.89 |
| HORVU4Hr1G017160.3 | Barley | nucleus, plastid | 26.37 | 7.81 |
| TraesCS4A01G211800.1 | Wheat | nucleus, plastid | 26.01 | 7.8 |
| Os11t0207000-01 | Rice | nucleus, plastid | 26.01 | 7.77 |
| TraesCS4A01G211700.2 | Wheat | nucleus, plastid | 26.01 | 7.61 |
| Os11t0207100-01 | Rice | nucleus | 26.01 | 7.61 |
| TraesCS4B01G104400.2 | Wheat | nucleus, plastid | 26.01 | 7.6 |
| TraesCS4D01G101700.1 | Wheat | nucleus, plastid | 26.01 | 7.59 |
| GSMUA_Achr10P... | Banana | nucleus, plastid | 24.18 | 7.51 |
| Solyc06g059760.2.1 | Tomato | nucleus, plastid | 24.54 | 7.46 |
| VIT_18s0001g15320.t01 | Wine grape | nucleus, plastid | 24.91 | 7.45 |
| Zm00001d007295_P003 | Maize | nucleus, plastid | 24.91 | 7.43 |
| HORVU4Hr1G017140.2 | Barley | plastid | 25.27 | 7.36 |
| Zm00001d023706_P002 | Maize | nucleus | 24.18 | 7.28 |
| GSMUA_Achr3P02850_001 | Banana | nucleus | 23.81 | 7.25 |
| KXG28056 | Sorghum | nucleus, plastid | 24.54 | 7.14 |
| KRH64564 | Soybean | nucleus, plastid | 23.81 | 7.14 |
| GSMUA_Achr2P20700_001 | Banana | plastid | 21.98 | 7.0 |
| KXG23150 | Sorghum | nucleus | 23.44 | 6.9 |
| KRH15928 | Soybean | nucleus, plastid | 23.08 | 6.89 |
| Zm00001d041803_P001 | Maize | nucleus | 23.08 | 6.88 |
| Zm00001d049125_P002 | Maize | nucleus, plastid | 23.08 | 6.77 |
| KRH53367 | Soybean | nucleus | 23.81 | 6.76 |
| GSMUA_Achr6P18610_001 | Banana | plastid | 21.61 | 6.74 |
| KRH18102 | Soybean | plastid | 22.34 | 6.57 |
| CDY57709 | Canola | nucleus, plastid | 10.99 | 6.1 |
| Solyc06g059750.2.1 | Tomato | nucleus, plastid | 18.68 | 6.09 |
| CDY67669 | Canola | mitochondrion, nucleus | 4.76 | 5.46 |
| CDY52362 | Canola | nucleus | 13.19 | 5.23 |
| CDY54085 | Canola | nucleus, plastid | 13.19 | 5.11 |
| GSMUA_Achr5P25900_001 | Banana | nucleus | 17.95 | 5.1 |
| CDY50201 | Canola | nucleus, plastid | 12.09 | 4.84 |
| CDX92713 | Canola | nucleus, plastid | 11.72 | 4.66 |
| CDY30691 | Canola | nucleus | 12.82 | 4.62 |
| CDX92714 | Canola | cytosol | 8.79 | 4.51 |
| CDX89417 | Canola | nucleus | 5.49 | 3.9 |
| PGSC0003DMT400092079 | Potato | nucleus | 10.26 | 3.79 |
Protein Annotations
| EnsemblPlants:CDY69476 | EnsemblPlantsGene:GSBRNA2T00088139001 | InterPro:LIM-bd/SEUSS | PANTHER:PTHR10378 | PANTHER:PTHR10378:SF16 | ProteinID:CDY69476 |
| ProteinID:CDY69476.1 | SEG:seg | UniParc:UPI0004EBC778 | UniProt:A0A078JV61 | MapMan:35.1 | : |
Description
BnaCnng63720DBnaCnng63720D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JV61]
Coordinates
chrLK039525:-:2730..3918
Molecular Weight (calculated)
28755.9 Da
IEP (calculated)
8.724
GRAVY (calculated)
-0.810
Length
273 amino acids
Sequence
(BLAST)
(BLAST)
001: MFGTESLAKF PRRTGPSSAL PGPSAQQPNE QPRQQQHQSV AQIANKDQSC GQSSLNYAFN AASASTSTGS IHQNSMKQRN QNAAYKTPSS PYGGISIQMQ
101: SPSNSGTMAP SSQQQHNLPS FQSPTSSSNN NYPSQNGITS INNHMGSTNL PAIQQAAADE ANESSSVQKI LNEILMNNNQ THNTSGGGGH ESFGNDGKGG
201: RNVSSSGVLM MNNGQVNTSI GGFGMTNING NNGLMNGRAG MMVRDPNVQQ DVGNQRLGGA VNAFNNFQCD WNV
101: SPSNSGTMAP SSQQQHNLPS FQSPTSSSNN NYPSQNGITS INNHMGSTNL PAIQQAAADE ANESSSVQKI LNEILMNNNQ THNTSGGGGH ESFGNDGKGG
201: RNVSSSGVLM MNNGQVNTSI GGFGMTNING NNGLMNGRAG MMVRDPNVQQ DVGNQRLGGA VNAFNNFQCD WNV
001: MVPSEPPNPV GGGENVPPSI LGGQGGAPLP SQPAFPSLVS PRTQFGNNMS MSMLGNAPNI SSLLNNQSFV NGIPGSMISM DTSGAESDPM SNVGFSGLSS
101: FNASSMVSPR SSGQVQGQQF SNVSANQLLA EQQRNKKMET QSFQHGQQQS MQQQFSTVRG GGLAGVGPVK MEPGQVSNDQ QHGQVQQQQQ KMLRNLGSVK
201: LEPQQIQAMR NLAQVKMEPQ HSEQSLFLQQ QQRQQQQQQQ QQFLQMPGQS PQAQMNIFQQ QRLMQLQQQQ LLKSMPQQRP QLPQQFQQQN LPLRPPLKPV
301: YEPGMGAQRL TQYMYRQQHR PEDNNIEFWR KFVAEYFAPN AKKRWCVSMY GSGRQTTGVF PQDVWHCEIC NRKPGRGFEA TAEVLPRLFK IKYESGTLEE
401: LLYVDMPRES QNSSGQIVLE YAKATQESVF EHLRVVRDGQ LRIVFSPDLK IFSWEFCARR HEELIPRRLL IPQVSQLGSA AQKYQQAAQN ATTDSALPEL
501: QNNCNMFVAS ARQLAKALEV PLVNDLGYTK RYVRCLQISE VVNSMKDLID YSRETRTGPI ESLAKFPRRT GPSSALPGPS PQQASDQLRQ QQQQQQQQQQ
601: QQQQQQQQQQ QQQTVSQNTN SDQSSRQVAL MQGNPSNGVN YAFNAASAST STSSIAGLIH QNSMKGRHQN AAYNPPNSPY GGNSVQMQSP SSSGTMVPSS
701: SQQQHNLPTF QSPTSSSNNN NPSQNGIPSV NHMGSTNSPA MQQAGEVDGN ESSSVQKILN EILMNNQAHN NSSGGSMVGH GSFGNDGKGQ ANVNSSGVLL
801: MNGQVNNNNN TNIGGAGGFG GGIGQSMAAN GINNINGNNS LMNGRVGMMV RDPNGQQDLG NQLLGAVNGF NNFDWNA
101: FNASSMVSPR SSGQVQGQQF SNVSANQLLA EQQRNKKMET QSFQHGQQQS MQQQFSTVRG GGLAGVGPVK MEPGQVSNDQ QHGQVQQQQQ KMLRNLGSVK
201: LEPQQIQAMR NLAQVKMEPQ HSEQSLFLQQ QQRQQQQQQQ QQFLQMPGQS PQAQMNIFQQ QRLMQLQQQQ LLKSMPQQRP QLPQQFQQQN LPLRPPLKPV
301: YEPGMGAQRL TQYMYRQQHR PEDNNIEFWR KFVAEYFAPN AKKRWCVSMY GSGRQTTGVF PQDVWHCEIC NRKPGRGFEA TAEVLPRLFK IKYESGTLEE
401: LLYVDMPRES QNSSGQIVLE YAKATQESVF EHLRVVRDGQ LRIVFSPDLK IFSWEFCARR HEELIPRRLL IPQVSQLGSA AQKYQQAAQN ATTDSALPEL
501: QNNCNMFVAS ARQLAKALEV PLVNDLGYTK RYVRCLQISE VVNSMKDLID YSRETRTGPI ESLAKFPRRT GPSSALPGPS PQQASDQLRQ QQQQQQQQQQ
601: QQQQQQQQQQ QQQTVSQNTN SDQSSRQVAL MQGNPSNGVN YAFNAASAST STSSIAGLIH QNSMKGRHQN AAYNPPNSPY GGNSVQMQSP SSSGTMVPSS
701: SQQQHNLPTF QSPTSSSNNN NPSQNGIPSV NHMGSTNSPA MQQAGEVDGN ESSSVQKILN EILMNNQAHN NSSGGSMVGH GSFGNDGKGQ ANVNSSGVLL
801: MNGQVNNNNN TNIGGAGGFG GGIGQSMAAN GINNINGNNS LMNGRVGMMV RDPNGQQDLG NQLLGAVNGF NNFDWNA
Arabidopsis Description
SEUTranscriptional corepressor SEUSS [Source:UniProtKB/Swiss-Prot;Acc:Q8W234]
SUBAcon: [nucleus,plastid]
SUBAcon: [nucleus,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.