CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90862
EER95753
EER97510
KXG23502

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G43850.1	EER90862	AT1G69120.1	16854969
AT1G43850.1	EER95753	AT1G69120.1	16854969
AT1G43850.1	EER97510	AT1G69120.1	16854969
AT1G43850.1	KXG23502	AT1G69120.1	16854969

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d041803_P001	Maize	nucleus	90.94	92.03
KXG28056	Sorghum	nucleus, plastid	70.87	70.04
CDY67669	Canola	mitochondrion, nucleus	15.21	59.24
VIT_18s0001g15320.t01	Wine grape	nucleus, plastid	51.35	52.14
GSMUA_Achr6P18610_001	Banana	plastid	48.11	50.91
KRH64564	Soybean	nucleus, plastid	48.87	49.73
Solyc06g059750.2.1	Tomato	nucleus, plastid	44.23	48.93
Solyc06g059760.2.1	Tomato	nucleus, plastid	47.14	48.66
KRH15928	Soybean	nucleus, plastid	48.0	48.63
KRH18102	Soybean	plastid	47.68	47.63
CDY14963	Canola	nucleus, plastid	37.65	47.29
Bra032192.1-P	Field mustard	nucleus, plastid	39.37	47.16
KRH53367	Soybean	nucleus	48.87	47.14
CDY40943	Canola	nucleus, plastid	38.84	46.51
Bra036931.1-P	Field mustard	nucleus, plastid	36.46	45.55
AT1G43850.1	Thale cress	nucleus, plastid	41.64	44.01
VIT_04s0044g01260.t01	Wine grape	plastid	39.48	41.97
GSMUA_Achr5P25900_001	Banana	nucleus	36.79	35.52
CDY70167	Canola	cytosol, mitochondrion, nucleus	10.68	34.86
KXG19170	Sorghum	plastid	22.11	26.25
KXG34470	Sorghum	nucleus, plastid	20.5	25.75
CDY69476	Canola	nucleus	6.9	23.44
PGSC0003DMT400092079	Potato	nucleus	18.45	23.14

Protein Annotations

EnsemblPlants:KXG23150	EnsemblPlantsGene:SORBI_3008G063000	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:LIM-bd/SEUSS
ncoils:Coil	PANTHER:PTHR10378	PANTHER:PTHR10378:SF17	PFAM:PF01803	ProteinID:KXG23150	ProteinID:KXG23150.1
SEG:seg	UniParc:UPI00081AE4C2	UniProt:A0A1B6PBK6	MapMan:35.1	:	:

Description

hypothetical protein

Coordinates

chr8:+:6789930..6797354

Molecular Weight (calculated)

99661.2 Da

IEP (calculated)

9.157

GRAVY (calculated)

-0.688

Length

927 amino acids

Sequence
(BLAST)

001: MVPSGQPNPM GGPGHQQVVG ASLLRTSSSL LGGGGAGAGA GGQPGMGMGM GGGGGVLPSQ SPFSSLVSPR TQYGGGGNGL LAGASSVASM LSRQQSYGNG
101: GTGAMPGTGA GLPIGGMQHR GGLDGVGDLV ATGGPDSMVF SSSGPGSLGN QLGADGLQQQ QQQLDAPQDS QNQQQQQQQQ QQQMSMAYNQ QHMMPQTQQQ
201: QQQQQPAVKL ENGGVLGGVK LEQQMGQPDQ SVSTQMLRSS SGGVKLEPQL QALRSLGAVK MEHQSSDPSV FLQQQQQQHM MQLSKQNPQA AATQLSLLQQ
301: QQRFLQLQQQ QQQQQILKNL PLQRNQLQQQ QQQQQQQQQQ QQQHQHQQLL RQQSLNMRTG KTPAYEPGTC AKRLTHYMYH QQNRPQDNNI EYWRNFVNEY
401: FAPSAKKRWC VSLYGNGRQT TGVFPQDVWH CEICNRKPGR GFETTVEVLP RLCQIKYASG TLEELLYVDM PRESQNSSGQ IVLDYTKAIQ ESVFEQLRVV
501: REGHLRIVFN QDLKIASWEF CARRHEELIP RRSIIPQVSQ LGSVVQKYQS SVQSSASLSS QDLQNNCNSF VACARQLAKA LEVPLVNDLG YTKRYVRCLQ
601: IAEVVNCMKD LIDHSRQTGS GPIESLHKFP RRGNSGGVSS VQAQQPSEEQ KPVPQNSNQS GQNSAPATGM QISASVNGDA ASNNSLNCAP STSAPSSSSV
701: VGLLQGSVSG RQDHPTSSGN GLYNGGNSAS VAKANSTNSM QSNGPASFPS PAPSASNGNM MPAPQHSSQM NSPTMSSNPP PMQTPTSRLQ EPEPNESQSS
801: VQRILQDLMM QSHINGVGPV GSDMRRANTI TPGLNGVNSL VGNPMTNNPG INGMGFGAMG GLGQQMRTAM GTNALAMNGR TGMNHSAHDL TQLSHQQQQR
901: DLGNQLLGGL RAANSFNNLQ YDWKSAQ

Best Arabidopsis Sequence Match ( AT1G43850.1 )
(BLAST)

001: MVPSEPPNPV GGGENVPPSI LGGQGGAPLP SQPAFPSLVS PRTQFGNNMS MSMLGNAPNI SSLLNNQSFV NGIPGSMISM DTSGAESDPM SNVGFSGLSS
101: FNASSMVSPR SSGQVQGQQF SNVSANQLLA EQQRNKKMET QSFQHGQQQS MQQQFSTVRG GGLAGVGPVK MEPGQVSNDQ QHGQVQQQQQ KMLRNLGSVK
201: LEPQQIQAMR NLAQVKMEPQ HSEQSLFLQQ QQRQQQQQQQ QQFLQMPGQS PQAQMNIFQQ QRLMQLQQQQ LLKSMPQQRP QLPQQFQQQN LPLRPPLKPV
301: YEPGMGAQRL TQYMYRQQHR PEDNNIEFWR KFVAEYFAPN AKKRWCVSMY GSGRQTTGVF PQDVWHCEIC NRKPGRGFEA TAEVLPRLFK IKYESGTLEE
401: LLYVDMPRES QNSSGQIVLE YAKATQESVF EHLRVVRDGQ LRIVFSPDLK IFSWEFCARR HEELIPRRLL IPQVSQLGSA AQKYQQAAQN ATTDSALPEL
501: QNNCNMFVAS ARQLAKALEV PLVNDLGYTK RYVRCLQISE VVNSMKDLID YSRETRTGPI ESLAKFPRRT GPSSALPGPS PQQASDQLRQ QQQQQQQQQQ
601: QQQQQQQQQQ QQQTVSQNTN SDQSSRQVAL MQGNPSNGVN YAFNAASAST STSSIAGLIH QNSMKGRHQN AAYNPPNSPY GGNSVQMQSP SSSGTMVPSS
701: SQQQHNLPTF QSPTSSSNNN NPSQNGIPSV NHMGSTNSPA MQQAGEVDGN ESSSVQKILN EILMNNQAHN NSSGGSMVGH GSFGNDGKGQ ANVNSSGVLL
801: MNGQVNNNNN TNIGGAGGFG GGIGQSMAAN GINNINGNNS LMNGRVGMMV RDPNGQQDLG NQLLGAVNGF NNFDWNA

Arabidopsis Description

SEUTranscriptional corepressor SEUSS [Source:UniProtKB/Swiss-Prot;Acc:Q8W234]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.