Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d023736_P001 | Maize | nucleus | 81.61 | 70.82 |
| KRH75125 | Soybean | nucleus | 16.59 | 60.66 |
| Os12t0501700-00 | Rice | nucleus | 51.12 | 48.93 |
| CDY19977 | Canola | nucleus | 18.83 | 41.18 |
| Bra025411.1-P | Field mustard | nucleus | 32.29 | 40.91 |
| EER97510 | Sorghum | nucleus | 46.19 | 40.71 |
| EER90862 | Sorghum | nucleus | 43.05 | 39.18 |
| Bra004361.1-P | Field mustard | nucleus | 32.29 | 38.1 |
| KRH03173 | Soybean | nucleus | 40.81 | 38.08 |
| VIT_14s0083g01030.t01 | Wine grape | nucleus | 42.15 | 38.06 |
| KRH56774 | Soybean | nucleus | 40.81 | 37.3 |
| KRH54740 | Soybean | nucleus | 40.36 | 36.89 |
| VIT_17s0000g04990.t01 | Wine grape | nucleus | 39.46 | 36.21 |
| VIT_01s0011g00100.t01 | Wine grape | nucleus | 39.01 | 36.1 |
| KRH63171 | Soybean | nucleus | 39.01 | 35.66 |
| PGSC0003DMT400003485 | Potato | nucleus | 39.46 | 35.63 |
| GSMUA_Achr3P02280_001 | Banana | nucleus | 41.7 | 35.36 |
| Solyc03g114830.2.1 | Tomato | nucleus | 39.01 | 35.22 |
| Solyc02g089210.2.1 | Tomato | nucleus | 39.46 | 35.2 |
| Solyc06g069430.2.1 | Tomato | nucleus | 38.56 | 35.1 |
| KRG93701 | Soybean | nucleus | 38.12 | 34.84 |
| EER89250 | Sorghum | nucleus | 34.98 | 34.67 |
| CDY58690 | Canola | nucleus | 37.22 | 34.44 |
| KRH18331 | Soybean | nucleus | 37.67 | 34.43 |
| CDY34564 | Canola | nucleus | 33.63 | 34.4 |
| PGSC0003DMT400010451 | Potato | nucleus | 38.56 | 34.4 |
| KRH45412 | Soybean | nucleus | 36.32 | 34.32 |
| KRH07467 | Soybean | nucleus | 36.32 | 34.32 |
| PGSC0003DMT400063313 | Potato | nucleus | 38.12 | 34.27 |
| KRH45099 | Soybean | nucleus | 38.12 | 34.27 |
| PGSC0003DMT400068325 | Potato | nucleus | 35.87 | 34.19 |
| EER95753 | Sorghum | nucleus | 41.26 | 34.07 |
| GSMUA_Achr10P... | Banana | nucleus | 43.5 | 34.04 |
| KXG37536 | Sorghum | nucleus | 36.77 | 34.02 |
| Bra012997.1-P | Field mustard | nucleus | 36.77 | 34.02 |
| Bra035952.1-P | Field mustard | nucleus | 36.77 | 34.02 |
| CDY16832 | Canola | nucleus | 36.77 | 34.02 |
| CDY02185 | Canola | nucleus | 36.77 | 34.02 |
| CDY36077 | Canola | nucleus | 33.63 | 33.94 |
| AT5G60910.1 | Thale cress | nucleus | 36.77 | 33.88 |
| CDY42841 | Canola | nucleus | 36.32 | 33.75 |
| Bra029347.1-P | Field mustard | nucleus | 36.32 | 33.75 |
| KRH70974 | Soybean | nucleus | 36.77 | 33.74 |
| CDY47002 | Canola | nucleus | 36.32 | 33.61 |
| PGSC0003DMT400072888 | Potato | nucleus | 36.77 | 33.61 |
| Solyc05g056620.1.1 | Tomato | nucleus | 36.32 | 33.2 |
| AT3G30260.1 | Thale cress | nucleus | 36.32 | 32.53 |
| OQU93000 | Sorghum | nucleus | 35.43 | 32.51 |
| EES07448 | Sorghum | nucleus | 36.77 | 32.16 |
| CDX86353 | Canola | nucleus | 35.87 | 32.13 |
| CDY45899 | Canola | nucleus | 35.87 | 32.13 |
| Solyc02g065730.1.1 | Tomato | nucleus | 33.63 | 32.05 |
| OQU80503 | Sorghum | nucleus | 32.74 | 31.88 |
| OQU85464 | Sorghum | nucleus | 34.53 | 31.82 |
| EER97012 | Sorghum | nucleus | 34.53 | 31.69 |
| CDX95960 | Canola | nucleus | 36.32 | 31.64 |
| EES15309 | Sorghum | nucleus | 34.08 | 31.54 |
| KXG26975 | Sorghum | nucleus | 33.18 | 31.49 |
| Bra038326.1-P | Field mustard | nucleus | 35.87 | 31.25 |
| CDY33554 | Canola | nucleus | 35.87 | 31.25 |
| CDY65811 | Canola | nucleus | 35.87 | 31.25 |
| Bra036201.1-P | Field mustard | nucleus | 34.53 | 31.05 |
| CDY00082 | Canola | nucleus | 34.53 | 31.05 |
| OQU81712 | Sorghum | nucleus | 33.18 | 30.96 |
| AT1G69120.1 | Thale cress | nucleus | 35.43 | 30.86 |
| KRH01382 | Soybean | nucleus | 34.98 | 30.83 |
| OQU85202 | Sorghum | nucleus | 32.74 | 30.42 |
| Bra011021.1-P | Field mustard | nucleus | 34.08 | 29.92 |
| AT1G26310.1 | Thale cress | nucleus | 34.08 | 29.8 |
| Bra004007.1-P | Field mustard | nucleus | 35.43 | 29.15 |
| CDY04265 | Canola | nucleus | 35.87 | 28.88 |
| CDY07357 | Canola | nucleus | 36.32 | 28.03 |
| EES01878 | Sorghum | nucleus | 30.49 | 24.55 |
| EES15827 | Sorghum | nucleus | 28.7 | 23.79 |
| EES00105 | Sorghum | nucleus | 27.8 | 23.05 |
| OQU77603 | Sorghum | nucleus | 29.15 | 22.26 |
| CDX85287 | Canola | nucleus | 18.39 | 21.93 |
| CDY35780 | Canola | nucleus | 18.83 | 21.32 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | UniProt:A0A1B6PCQ5 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 |
| InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 | EnsemblPlants:KXG23502 | ProteinID:KXG23502 | ProteinID:KXG23502.1 |
| InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 |
| PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF241 | SMART:SM00432 | EnsemblPlantsGene:SORBI_3008G103500 | SUPFAM:SSF55455 |
| InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI00081AD9E9 | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr8:-:48988277..48990296
Molecular Weight (calculated)
24878.6 Da
IEP (calculated)
9.162
GRAVY (calculated)
-0.586
Length
223 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGRGKVEV RRIDNSVSRQ VTFSKRRRGL AKKARELAVL CDADVALLIF SDKGTLHHFA AYARYGNMSY DHVKMRSKLE ALQKSQRNLM GEQLESLTFR
101: EVQQLEHQID SALRNIRSRK DHILLNSIEE LQNKETFLME QNSILEKEKA ALGASSLHTT NTADSSTAVA TAALPNLNIC PGDDSDEPGR AAAPPPPGAA
201: ISLPWWMLQP PPAVSQRQEQ EQH
101: EVQQLEHQID SALRNIRSRK DHILLNSIEE LQNKETFLME QNSILEKEKA ALGASSLHTT NTADSSTAVA TAALPNLNIC PGDDSDEPGR AAAPPPPGAA
201: ISLPWWMLQP PPAVSQRQEQ EQH
001: MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALIVFSS KGKLFEYSTD SCMERILERY DRYLYSDKQL VGRDVSQSEN WVLEHAKLKA
101: RVEVLEKNKR NFMGEDLDSL SLKELQSLEH QLDAAIKSIR SRKNQAMFES ISALQKKDKA LQDHNNSLLK KIKEREKKTG QQEGQLVQCS NSSSVLLPQY
201: CVTSSRDGFV ERVGGENGGA SSLTEPNSLL PAWMLRPTTT NE
101: RVEVLEKNKR NFMGEDLDSL SLKELQSLEH QLDAAIKSIR SRKNQAMFES ISALQKKDKA LQDHNNSLLK KIKEREKKTG QQEGQLVQCS NSSSVLLPQY
201: CVTSSRDGFV ERVGGENGGA SSLTEPNSLL PAWMLRPTTT NE
Arabidopsis Description
AGL8Agamous-like MADS-box protein AGL8 [Source:UniProtKB/Swiss-Prot;Acc:Q38876]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.