Factsheet for Solyc02g089210.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008950.2.1
Solyc10g077010.1.1
Solyc10g081170.1.1
Solyc11g072240.1.1
Solyc12g099990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G30260.1	Solyc01g008950.2.1	AT2G41090.1	17360592
AT3G30260.1	Solyc10g077010.1.1	AT2G41090.1	17360592
AT3G30260.1	Solyc10g081170.1.1	AT2G41090.1	17360592
AT3G30260.1	Solyc11g072240.1.1	AT2G41090.1	17360592
AT3G30260.1	Solyc12g099990.1.1	AT2G41090.1	17360592
AT3G30260.1	Solyc01g008950.2.1	AT5G21274.1	17360592
AT3G30260.1	Solyc10g077010.1.1	AT5G21274.1	17360592
AT3G30260.1	Solyc10g081170.1.1	AT5G21274.1	17360592
AT3G30260.1	Solyc11g072240.1.1	AT5G21274.1	17360592
AT3G30260.1	Solyc12g099990.1.1	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400003485	Potato	nucleus	94.0	95.14
CDY19977	Canola	nucleus	27.6	67.65
VIT_14s0083g01030.t01	Wine grape	nucleus	66.4	67.21
Solyc02g065730.1.1	Tomato	nucleus	62.8	67.09
Bra025411.1-P	Field mustard	nucleus	45.6	64.77
Solyc03g114830.2.1	Tomato	nucleus	60.4	61.13
Solyc05g056620.1.1	Tomato	nucleus	56.8	58.2
KRH45099	Soybean	nucleus	55.6	56.05
Solyc06g069430.2.1	Tomato	nucleus	54.8	55.92
GSMUA_Achr2P13650_001	Banana	nucleus	53.6	54.47
KRH01382	Soybean	nucleus	54.4	53.75
EER97510	Sorghum	nucleus	53.6	52.96
KRH18331	Soybean	nucleus	51.6	52.87
GSMUA_Achr6P00050_001	Banana	nucleus	50.8	52.48
EER90862	Sorghum	nucleus	51.2	52.24
KRG93701	Soybean	nucleus	50.4	51.64
CDX86353	Canola	nucleus	51.2	51.41
GSMUA_Achr4P23540_001	Banana	nucleus	50.8	51.21
Os07t0605200-01	Rice	nucleus	50.8	51.0
Os03t0752800-02	Rice	nucleus	50.0	50.81
CDY45899	Canola	nucleus	50.4	50.6
TraesCS5A01G391700.1	Wheat	nucleus	49.2	50.41
Bra036201.1-P	Field mustard	nucleus	50.0	50.4
CDY00082	Canola	nucleus	50.0	50.4
GSMUA_Achr7P00460_001	Banana	nucleus	50.4	50.4
Zm00001d022088_P004	Maize	nucleus	51.6	50.0
GSMUA_Achr8P04330_001	Banana	nucleus	48.4	49.39
GSMUA_Achr3P30440_001	Banana	nucleus	45.2	49.13
TraesCS5B01G396600.2	Wheat	nucleus	49.2	49.0
AT3G30260.1	Thale cress	nucleus	48.8	49.0
TraesCS2A01G174300.3	Wheat	nucleus	52.0	48.69
TraesCS5D01G401500.1	Wheat	cytosol, nucleus	49.2	48.43
TraesCS2D01G262700.1	Wheat	nucleus	52.4	48.34
TraesCS2B01G200800.1	Wheat	nucleus	51.6	48.31
TraesCS2D01G181400.3	Wheat	nucleus	51.6	48.31
Zm00001d018667_P003	Maize	nucleus	52.0	47.97
TraesCS2A01G261200.2	Wheat	nucleus	52.4	47.81
TraesCS2B01G281000.1	Wheat	nucleus	52.4	47.81
EER95753	Sorghum	nucleus	51.6	47.78
GSMUA_Achr3P02280_001	Banana	nucleus	49.2	46.77
GSMUA_Achr10P...	Banana	nucleus	53.2	46.67
Os07t0108900-02	Rice	nucleus	49.6	46.44
Zm00001d013259_P002	Maize	nucleus	51.2	45.88
GSMUA_Achr3P25280_001	Banana	nucleus	46.8	43.98
Solyc03g114840.2.1	Tomato	nucleus	43.2	43.9
Solyc04g005320.2.1	Tomato	nucleus	41.2	43.28
Solyc12g038510.1.1	Tomato	nucleus	43.2	43.2
Solyc05g015750.2.1	Tomato	nucleus	41.6	43.15
HORVU2Hr1G063800.7	Barley	nucleus, plastid	52.4	42.81
Solyc02g089200.2.1	Tomato	nucleus	42.0	42.68
Zm00001d007949_P001	Maize	nucleus	51.6	42.3
Os12t0501700-00	Rice	nucleus	39.2	42.06
Zm00001d034045_P003	Maize	nucleus	48.4	41.58
Solyc05g012020.2.1	Tomato	nucleus	40.0	41.32
Solyc03g019710.2.1	Tomato	nucleus	28.4	40.11
CDX85287	Canola	nucleus	29.6	39.57
KXG23502	Sorghum	nucleus	35.2	39.46
HORVU5Hr1G095630.3	Barley	nucleus, plastid	48.4	39.41
Solyc01g093960.2.1	Tomato	nucleus	39.6	39.29
CDY35780	Canola	nucleus	29.2	37.06
Zm00001d023736_P001	Maize	nucleus	36.8	35.8
Solyc11g028020.1.1	Tomato	nucleus	30.8	34.53
Solyc02g091550.1.1	Tomato	nucleus	31.6	33.62
Solyc02g071730.2.1	Tomato	nucleus	31.6	31.85
Solyc01g106170.2.1	Tomato	mitochondrion	17.2	29.05
Solyc07g055920.2.1	Tomato	nucleus	30.8	28.84
Solyc04g076700.2.1	Tomato	nucleus	11.6	21.97
Solyc12g088090.1.1	Tomato	nucleus	19.2	21.62
Solyc06g064840.2.1	Tomato	nucleus	15.6	19.4

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	ncoils:Coil	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100
InterPro:IPR002487	InterPro:IPR036879	UniProt:K4BC73	InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486
PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF241
SMART:SM00432	SUPFAM:SSF55455	EnsemblPlantsGene:Solyc02g089210.2	EnsemblPlants:Solyc02g089210.2.1	InterPro:TF_Kbox	InterPro:TF_MADSbox
InterPro:TF_MADSbox_sf	UniParc:UPI00018DD86F	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2:+:51089007..51093746

Molecular Weight (calculated)

28590.8 Da

IEP (calculated)

9.867

GRAVY (calculated)

-0.908

Length

250 amino acids

Sequence
(BLAST)

001: MGRGRVELKR IENKISRQVT FSKRRSGLLK KANEISVLCD ADVALIVFST KGKLFEYSSN DSSMESILER YERCSYAERQ MNANDSDPKE NWSVEYPKLM
101: SRIELLQRNI RHYMGQDLDP LSLRELQSIE QQIDTSLKRI RSRKNQLMHE SISELQKKEK ALQEQNNLIT KKLKENEKTQ PNSSGQNSAT VHVFPSHSHH
201: QLPNLTIGGA FGGMNRDGSG QAHHYPGSNN NNNNSSLIPP WMLRHVSNEG

Best Arabidopsis Sequence Match ( AT1G69120.2 )
(BLAST)

001: MGRGRVQLKR IENKINRQVT FSKRRAGLLK KAHEISVLCD AEVALVVFSH KGKLFEYSTD SCMEKILERY ERYSYAERQL IAPESDVNTN WSMEYNRLKA
101: KIELLERNQR HYLGEDLQAM SPKELQNLEQ QLDTALKHIR TRKNQLMYES INELQKKEKA IQEQNSMLSK QIKEREKILR AQQEQWDQQN QGHNMPPPLP
201: PQQHQIQHPY MLSHQPSPFL NMGLMQWSPN EQTY

Arabidopsis Description

AP1AP1 [Source:UniProtKB/TrEMBL;Acc:A0A178W846]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.