Factsheet for Solyc06g069430.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008950.2.1
Solyc01g093960.2.1
Solyc02g071730.2.1
Solyc02g091550.1.1
Solyc03g005240.1.1
Solyc03g096760.1.1
Solyc03g096770.1.1
Solyc03g096780.1.1
Solyc04g005320.2.1
Solyc04g076280.2.1
Solyc05g012020.2.1
Solyc06g053930.2.1
Solyc06g072990.1.1
Solyc10g017640.1.1
Solyc10g077010.1.1
Solyc10g081170.1.1
Solyc11g072240.1.1
Solyc12g099990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60910.1	Solyc04g005320.2.1	AT2G03710.1	15805477
AT5G60910.1	Solyc05g012020.2.1	AT2G03710.1	15805477
AT5G60910.1	Solyc01g008950.2.1	AT2G41100.1	17360592
AT5G60910.1	Solyc10g077010.1.1	AT2G41100.1	17360592
AT5G60910.1	Solyc10g081170.1.1	AT2G41100.1	17360592
AT5G60910.1	Solyc11g072240.1.1	AT2G41100.1	17360592
AT5G60910.1	Solyc12g099990.1.1	AT2G41100.1	17360592
AT5G60910.1	Solyc01g093960.2.1	AT2G45650.1	15805477
AT5G60910.1	Solyc10g017640.1.1	AT2G45660.1	15805477
AT5G60910.1	Solyc10g017640.1.1	AT2G45660.1	21798944
AT5G60910.1	Solyc03g096760.1.1	AT3G49580.1	21798944
AT5G60910.1	Solyc03g096770.1.1	AT3G49580.1	21798944
AT5G60910.1	Solyc03g096780.1.1	AT3G49580.1	21798944
AT5G60910.1	Solyc06g072990.1.1	AT3G49580.1	21798944
AT5G60910.1	Solyc03g005240.1.1	AT4G14640.1	17360592
AT5G60910.1	Solyc06g053930.2.1	AT4G14640.1	17360592
AT5G60910.1	Solyc02g071730.2.1	AT4G18960.1	15805477
AT5G60910.1	Solyc04g076280.2.1	AT4G24540.1	15805477
AT5G60910.1	Solyc02g091550.1.1	AT4G37940.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400010451	Potato	nucleus	95.51	93.6
Solyc03g114830.2.1	Tomato	nucleus	81.22	80.57
KRH63171	Soybean	nucleus	64.49	64.75
Bra029347.1-P	Field mustard	nucleus	63.27	64.58
CDY42841	Canola	nucleus	63.27	64.58
AT5G60910.1	Thale cress	nucleus	63.67	64.46
KRH54740	Soybean	nucleus	64.08	64.34
CDY47002	Canola	nucleus	62.86	63.9
CDY58690	Canola	nucleus	62.04	63.07
VIT_17s0000g04990.t01	Wine grape	nucleus	62.45	62.96
Bra035952.1-P	Field mustard	nucleus	61.63	62.66
CDY02185	Canola	nucleus	61.63	62.66
CDY16832	Canola	nucleus	61.63	62.66
Bra012997.1-P	Field mustard	nucleus	61.22	62.24
TraesCS5A01G391700.1	Wheat	nucleus	57.96	58.2
Solyc05g056620.1.1	Tomato	nucleus	57.96	58.2
TraesCS5B01G396600.2	Wheat	nucleus	57.55	56.18
EER90862	Sorghum	nucleus	55.92	55.92
TraesCS5D01G401500.1	Wheat	cytosol, nucleus	57.96	55.91
Os03t0752800-02	Rice	nucleus	55.92	55.69
GSMUA_Achr2P13650_001	Banana	nucleus	55.51	55.28
Solyc02g065730.1.1	Tomato	nucleus	52.65	55.13
GSMUA_Achr6P00050_001	Banana	nucleus	54.29	54.96
Solyc02g089210.2.1	Tomato	nucleus	55.92	54.8
GSMUA_Achr4P23540_001	Banana	nucleus	54.69	54.03
Zm00001d018667_P003	Maize	nucleus	59.18	53.51
GSMUA_Achr8P04330_001	Banana	nucleus	53.47	53.47
EER95753	Sorghum	nucleus	58.37	52.96
EER97510	Sorghum	nucleus	54.29	52.57
Os07t0108900-02	Rice	nucleus	57.14	52.43
GSMUA_Achr7P00460_001	Banana	nucleus	53.47	52.4
TraesCS2D01G262700.1	Wheat	nucleus	57.96	52.4
TraesCS2A01G261200.2	Wheat	nucleus	57.96	51.82
TraesCS2B01G281000.1	Wheat	nucleus	57.96	51.82
Zm00001d022088_P004	Maize	nucleus	53.47	50.78
Os07t0605200-01	Rice	nucleus	50.61	49.8
Zm00001d013259_P002	Maize	nucleus	56.33	49.46
GSMUA_Achr3P30440_001	Banana	nucleus	45.71	48.7
TraesCS2A01G174300.3	Wheat	nucleus	53.06	48.69
GSMUA_Achr3P02280_001	Banana	nucleus	52.24	48.67
GSMUA_Achr10P...	Banana	nucleus	56.33	48.42
TraesCS2D01G181400.3	Wheat	nucleus	52.65	48.31
TraesCS2B01G200800.1	Wheat	nucleus	52.65	48.31
Zm00001d007949_P001	Maize	nucleus	58.78	47.21
Zm00001d034045_P003	Maize	nucleus	55.1	46.39
GSMUA_Achr3P25280_001	Banana	nucleus	50.2	46.24
HORVU2Hr1G063800.7	Barley	nucleus, plastid	57.14	45.75
HORVU5Hr1G095630.3	Barley	nucleus, plastid	57.14	45.6
Solyc04g005320.2.1	Tomato	nucleus	43.27	44.54
Solyc03g114840.2.1	Tomato	nucleus	44.49	44.31
Solyc12g038510.1.1	Tomato	nucleus	44.49	43.6
Solyc01g093960.2.1	Tomato	nucleus	43.67	42.46
Solyc05g015750.2.1	Tomato	nucleus	41.63	42.32
Solyc02g089200.2.1	Tomato	nucleus	42.45	42.28
Solyc03g019710.2.1	Tomato	nucleus	30.2	41.81
Solyc05g012020.2.1	Tomato	nucleus	41.22	41.74
Os12t0501700-00	Rice	nucleus	36.73	38.63
KXG23502	Sorghum	nucleus	35.1	38.56
Solyc02g091550.1.1	Tomato	nucleus	35.1	36.6
Zm00001d023736_P001	Maize	nucleus	37.14	35.41
Solyc11g028020.1.1	Tomato	nucleus	31.43	34.53
Solyc02g071730.2.1	Tomato	nucleus	33.47	33.06
Solyc07g055920.2.1	Tomato	nucleus	34.69	31.84
Solyc01g106170.2.1	Tomato	mitochondrion	17.14	28.38
Solyc04g076700.2.1	Tomato	nucleus	13.06	24.24
Solyc12g088090.1.1	Tomato	nucleus	20.0	22.07
Solyc06g064840.2.1	Tomato	nucleus	16.33	19.9

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	ncoils:Coil	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100
InterPro:IPR002487	InterPro:IPR036879	UniProt:K4C8B6	InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486
PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF155
SMART:SM00432	SUPFAM:SSF55455	EnsemblPlantsGene:Solyc06g069430.2	EnsemblPlants:Solyc06g069430.2.1	InterPro:TF_Kbox	InterPro:TF_MADSbox
InterPro:TF_MADSbox_sf	UniParc:UPI0002766976	:	:	:	:

Description

No Description!

Coordinates

chr6:-:43174749..43182943

Molecular Weight (calculated)

28291.6 Da

IEP (calculated)

9.568

GRAVY (calculated)

-0.828

Length

245 amino acids

Sequence
(BLAST)

001: MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVGLIVFST KGKLFEYAND SCMERILERY ERYSFAEKQL VPTDHTSPVS WTLEHAKLKA
101: RLEVLQRNQK HYVGEDLESL SMKELQNLEH QLDSALKHIR SRKNQLMHES ISVLQKKDRA LQEQNNQLSK KVKEREKEVA QQNQWEINSS SFVLPQQLDS
201: PHLGEAYQST NVIDNGEVEG GSSSQQQGAA NNTVMPQWML RHLNN

Best Arabidopsis Sequence Match ( AT5G60910.1 )
(BLAST)

001: MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALIVFSS KGKLFEYSTD SCMERILERY DRYLYSDKQL VGRDVSQSEN WVLEHAKLKA
101: RVEVLEKNKR NFMGEDLDSL SLKELQSLEH QLDAAIKSIR SRKNQAMFES ISALQKKDKA LQDHNNSLLK KIKEREKKTG QQEGQLVQCS NSSSVLLPQY
201: CVTSSRDGFV ERVGGENGGA SSLTEPNSLL PAWMLRPTTT NE

Arabidopsis Description

AGL8Agamous-like MADS-box protein AGL8 [Source:UniProtKB/Swiss-Prot;Acc:Q38876]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.