CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69345
CDX74754
CDX74755
CDX75686
CDX78909
CDX86738
CDX90394
CDX92641
CDX98597
CDX99406
CDY02978
CDY03445
CDY04164
CDY06478
CDY08148
CDY09267
CDY11019
CDY13289
CDY18911
CDY18912
CDY27368
CDY33113
CDY37054
CDY45709
CDY49686
CDY51202
CDY53885
CDY53886
CDY60686
CDY60689
CDY69077

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60910.1	CDY02978	AT2G03710.1	15805477
AT5G60910.1	CDY04164	AT2G03710.1	15805477
AT5G60910.1	CDY33113	AT2G03710.1	15805477
AT5G60910.1	CDY45709	AT2G03710.1	15805477
AT5G60910.1	CDY49686	AT2G03710.1	15805477
AT5G60910.1	CDY51202	AT2G03710.1	15805477
AT5G60910.1	CDX74754	AT2G45650.1	15805477
AT5G60910.1	CDY18911	AT2G45650.1	15805477
AT5G60910.1	CDY18912	AT2G45650.1	15805477
AT5G60910.1	CDY53885	AT2G45650.1	15805477
AT5G60910.1	CDY60686	AT2G45650.1	15805477
AT5G60910.1	CDX74755	AT2G45660.1	15805477
AT5G60910.1	CDY27368	AT2G45660.1	15805477
AT5G60910.1	CDY37054	AT2G45660.1	15805477
AT5G60910.1	CDY53886	AT2G45660.1	15805477
AT5G60910.1	CDY60689	AT2G45660.1	15805477
AT5G60910.1	CDY69077	AT2G45660.1	15805477
AT5G60910.1	CDX74755	AT2G45660.1	21798944
AT5G60910.1	CDY27368	AT2G45660.1	21798944
AT5G60910.1	CDY37054	AT2G45660.1	21798944
AT5G60910.1	CDY53886	AT2G45660.1	21798944
AT5G60910.1	CDY60689	AT2G45660.1	21798944
AT5G60910.1	CDY69077	AT2G45660.1	21798944
AT5G60910.1	CDY08148	AT3G49580.1	21798944
AT5G60910.1	CDX86738	AT4G11880.1	15805477
AT5G60910.1	CDY13289	AT4G11880.1	15805477
AT5G60910.1	CDY06478	AT4G14640.1	17360592
AT5G60910.1	CDX78909	AT4G18960.1	15805477
AT5G60910.1	CDX98597	AT4G18960.1	15805477
AT5G60910.1	CDX99406	AT4G18960.1	15805477
AT5G60910.1	CDY09267	AT4G18960.1	15805477
AT5G60910.1	CDX92641	AT4G24540.1	15805477
AT5G60910.1	CDY03445	AT4G24540.1	15805477
AT5G60910.1	CDY11019	AT4G24540.1	15805477
AT5G60910.1	CDX69345	AT4G37940.1	15805477
AT5G60910.1	CDX75686	AT4G37940.1	15805477
AT5G60910.1	CDX90394	AT4G37940.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra035952.1-P	Field mustard	nucleus	100.0	100.0
AT5G60910.1	Thale cress	nucleus	92.95	92.56
CDY02185	Canola	nucleus	91.7	91.7
CDY42841	Canola	nucleus	90.87	91.25
CDY47002	Canola	nucleus	90.04	90.04
CDY58690	Canola	nucleus	90.04	90.04
CDY60686	Canola	cytosol, nucleus, plastid	17.84	64.18
KRH03173	Soybean	nucleus	62.24	62.76
CDY19977	Canola	nucleus	26.14	61.76
Solyc06g069430.2.1	Tomato	nucleus	62.66	61.63
Solyc03g114830.2.1	Tomato	nucleus	62.66	61.13
KRH56774	Soybean	nucleus	61.83	61.07
PGSC0003DMT400063313	Potato	nucleus	61.83	60.08
VIT_17s0000g04990.t01	Wine grape	nucleus	59.75	59.26
PGSC0003DMT400010451	Potato	nucleus	61.0	58.8
GSMUA_Achr2P13650_001	Banana	nucleus	56.02	54.88
CDY72391	Canola	nucleus	17.01	54.67
GSMUA_Achr6P00050_001	Banana	nucleus	53.94	53.72
GSMUA_Achr4P23540_001	Banana	nucleus	54.36	52.82
CDY36077	Canola	nucleus	48.13	52.49
CDY34564	Canola	nucleus	47.3	52.29
TraesCS5A01G391700.1	Wheat	nucleus	51.87	51.23
GSMUA_Achr7P00460_001	Banana	nucleus	53.11	51.2
EER90862	Sorghum	nucleus	51.87	51.02
GSMUA_Achr8P04330_001	Banana	nucleus	51.87	51.02
Os03t0752800-02	Rice	nucleus	51.45	50.41
TraesCS5B01G396600.2	Wheat	nucleus	52.28	50.2
TraesCS5D01G401500.1	Wheat	cytosol, nucleus	52.28	49.61
EER97510	Sorghum	nucleus	51.87	49.41
CDX95960	Canola	nucleus	52.28	49.22
CDY33554	Canola	nucleus	52.28	49.22
CDY65811	Canola	nucleus	52.28	49.22
Zm00001d022088_P004	Maize	nucleus	52.28	48.84
GSMUA_Achr3P30440_001	Banana	nucleus	46.06	48.26
GSMUA_Achr10P...	Banana	nucleus	56.85	48.07
Os07t0605200-01	Rice	nucleus	49.38	47.79
CDX79856	Canola	nucleus	17.43	47.19
Os07t0108900-02	Rice	nucleus	52.28	47.19
GSMUA_Achr3P25280_001	Banana	nucleus	51.87	46.99
TraesCS2D01G262700.1	Wheat	nucleus	52.7	46.86
EER95753	Sorghum	nucleus	52.28	46.67
TraesCS2A01G174300.3	Wheat	nucleus	51.45	46.44
TraesCS2A01G261200.2	Wheat	nucleus	52.7	46.35
TraesCS2B01G281000.1	Wheat	nucleus	52.7	46.35
Zm00001d018667_P003	Maize	nucleus	51.45	45.76
TraesCS2B01G200800.1	Wheat	nucleus	50.62	45.69
TraesCS2D01G181400.3	Wheat	nucleus	50.62	45.69
GSMUA_Achr3P02280_001	Banana	nucleus	49.79	45.63
CDY04265	Canola	nucleus	51.87	45.13
CDY00082	Canola	nucleus	46.06	44.76
Zm00001d013259_P002	Maize	nucleus	51.04	44.09
CDY45899	Canola	nucleus	45.23	43.78
CDY07357	Canola	nucleus	52.28	43.6
CDX86353	Canola	nucleus	44.81	43.37
Zm00001d034045_P003	Maize	nucleus	50.21	41.58
Zm00001d007949_P001	Maize	nucleus	52.28	41.31
HORVU2Hr1G063800.7	Barley	nucleus, plastid	52.28	41.18
CDY18911	Canola	nucleus	39.83	40.51
HORVU5Hr1G095630.3	Barley	nucleus, plastid	51.45	40.39
Os12t0501700-00	Rice	nucleus	39.0	40.34
CDY48451	Canola	nucleus	25.31	39.87
CDX71922	Canola	nucleus	21.58	38.52
CDX74754	Canola	nucleus	40.66	38.28
CDY18912	Canola	nucleus	38.17	38.17
CDY34718	Canola	nucleus	39.83	38.1
CDY11824	Canola	nucleus	38.59	37.96
CDY66153	Canola	nucleus	38.59	37.96
CDY53885	Canola	nucleus	40.25	37.74
CDY43239	Canola	nucleus	39.0	37.6
CDY26462	Canola	nucleus	39.42	37.4
CDY15724	Canola	nucleus	39.0	37.3
CDY57524	Canola	nucleus	38.59	37.2
CDX78653	Canola	nucleus	39.83	37.07
CDX84935	Canola	nucleus	38.59	37.05
KXG23502	Sorghum	nucleus	34.02	36.77
CDY27603	Canola	nucleus	38.59	36.76
CDX69499	Canola	nucleus	40.25	36.74
CDX70651	Canola	nucleus	39.42	36.68
CDY03905	Canola	nucleus	39.0	34.81
Zm00001d023736_P001	Maize	nucleus	36.93	34.63
CDY51202	Canola	nucleus	36.1	33.85
CDY09267	Canola	nucleus	34.85	33.73
CDY02978	Canola	nucleus	35.68	33.59
CDX89097	Canola	nucleus	34.02	33.33
CDX90741	Canola	nucleus	31.95	33.33
CDY04164	Canola	nucleus	35.68	33.33
CDX98597	Canola	nucleus	34.44	33.07
CDX78909	Canola	nucleus	34.44	32.94
CDX79857	Canola	nucleus	33.2	32.79
CDX75412	Canola	nucleus	31.95	32.08
CDX90394	Canola	nucleus	30.29	31.88
CDX69345	Canola	nucleus	29.88	31.72
CDX69036	Canola	nucleus	31.54	31.67
CDX72465	Canola	nucleus	31.54	31.67
CDY49287	Canola	nucleus	31.54	31.67
CDX75686	Canola	nucleus	29.88	31.44
CDX98330	Canola	nucleus	31.95	31.05
CDY25613	Canola	nucleus	29.05	30.7
CDX85287	Canola	nucleus	23.65	30.48
CDX89496	Canola	nucleus	28.63	30.13
CDY35780	Canola	nucleus	23.65	28.93
CDY49254	Canola	nucleus	31.95	28.0
CDX89005	Canola	nucleus	31.95	27.9
CDY00589	Canola	nucleus	31.54	27.64
CDY33113	Canola	nucleus	35.27	27.51
CDX99406	Canola	nucleus	34.44	26.6
CDY65347	Canola	nucleus	17.43	26.58
CDY01574	Canola	nucleus	12.86	25.2
CDY60297	Canola	nucleus	30.29	25.0
CDY13236	Canola	mitochondrion	19.09	22.89
CDY45709	Canola	nucleus	16.18	22.54
CDY49686	Canola	nucleus	16.18	22.54
CDY42485	Canola	nucleus	35.27	22.49
CDX67765	Canola	nucleus	31.95	22.13
CDX71166	Canola	nucleus	30.29	20.98
CDY71878	Canola	endoplasmic reticulum	21.16	19.39
CDY65346	Canola	cytosol	0.83	8.0

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	GO:A0A078FVN6	UniProt:A0A078FVN6	EnsemblPlants:CDY16832	ProteinID:CDY16832
ProteinID:CDY16832.1	ncoils:Coil	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00094717001	InterPro:IPR002100
InterPro:IPR002487	InterPro:IPR036879	InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404
ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF155	SMART:SM00432
SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0002541FB1	SEG:seg

Description

BnaA09g05500DBnaA09g05500D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FVN6]

Coordinates

chrLK032067:+:546516..549778

Molecular Weight (calculated)

27497.9 Da

IEP (calculated)

9.841

GRAVY (calculated)

-0.682

Length

241 amino acids

Sequence
(BLAST)

001: MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALVVFSS KGKLFEYSTD SSMERILERY DRYLYSDKQL VGRDISQSEN WVLEHAKLKA
101: RVEVLEKNKR NFMGEDLDSL SIKELQSLEH QLDAAIKSIR SRKNQAMFES ISALQKKDKA LQDHNNTLLK KIKEKEKEKN TGQQEGQLIQ CSNNSSVLQP
201: QYCVTASRDG LVERVVGENG GASSLIEPNS LLPAWMLRSN E

Best Arabidopsis Sequence Match ( AT5G60910.1 )
(BLAST)

001: MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALIVFSS KGKLFEYSTD SCMERILERY DRYLYSDKQL VGRDVSQSEN WVLEHAKLKA
101: RVEVLEKNKR NFMGEDLDSL SLKELQSLEH QLDAAIKSIR SRKNQAMFES ISALQKKDKA LQDHNNSLLK KIKEREKKTG QQEGQLVQCS NSSSVLLPQY
201: CVTSSRDGFV ERVGGENGGA SSLTEPNSLL PAWMLRPTTT NE

Arabidopsis Description

AGL8Agamous-like MADS-box protein AGL8 [Source:UniProtKB/Swiss-Prot;Acc:Q38876]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.