Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra030222.1-P | Field mustard | nucleus | 97.81 | 98.24 |
| CDX89496 | Canola | nucleus | 95.18 | 94.76 |
| AT2G22630.2 | Thale cress | nucleus | 82.89 | 83.26 |
| CDX69345 | Canola | nucleus | 78.51 | 78.85 |
| CDX90394 | Canola | nucleus | 78.95 | 78.6 |
| CDX75686 | Canola | nucleus | 78.51 | 78.17 |
| CDY48451 | Canola | nucleus | 44.3 | 66.01 |
| VIT_00s0211g00180.t01 | Wine grape | nucleus | 63.16 | 64.29 |
| Solyc02g091550.1.1 | Tomato | nucleus | 62.72 | 60.85 |
| KRH74451 | Soybean | nucleus | 57.89 | 59.46 |
| KRH39494 | Soybean | nucleus | 57.02 | 58.82 |
| CDX72465 | Canola | nucleus | 60.53 | 57.5 |
| CDY49287 | Canola | nucleus | 60.53 | 57.5 |
| CDX75412 | Canola | nucleus | 57.89 | 55.0 |
| CDX69036 | Canola | nucleus | 57.02 | 54.17 |
| CDY60686 | Canola | cytosol, nucleus, plastid | 14.91 | 50.75 |
| CDY72391 | Canola | nucleus | 16.67 | 50.67 |
| CDX79856 | Canola | nucleus | 17.98 | 46.07 |
| CDX71922 | Canola | nucleus | 24.56 | 41.48 |
| CDY19977 | Canola | nucleus | 17.11 | 38.24 |
| CDX71166 | Canola | nucleus | 56.14 | 36.78 |
| CDX90741 | Canola | nucleus | 35.09 | 34.63 |
| CDY36077 | Canola | nucleus | 32.02 | 33.03 |
| CDY34564 | Canola | nucleus | 31.58 | 33.03 |
| CDY09267 | Canola | nucleus | 35.09 | 32.13 |
| CDX98597 | Canola | nucleus | 35.09 | 31.87 |
| CDX78909 | Canola | nucleus | 35.09 | 31.75 |
| CDY18911 | Canola | nucleus | 32.89 | 31.65 |
| CDY26462 | Canola | nucleus | 34.65 | 31.1 |
| CDY34718 | Canola | nucleus | 33.77 | 30.56 |
| CDY57524 | Canola | nucleus | 33.33 | 30.4 |
| CDX79857 | Canola | nucleus | 32.46 | 30.33 |
| CDY66153 | Canola | nucleus | 32.46 | 30.2 |
| CDY11824 | Canola | nucleus | 32.46 | 30.2 |
| CDY15724 | Canola | nucleus | 33.33 | 30.16 |
| CDX78653 | Canola | nucleus | 34.21 | 30.12 |
| CDY43239 | Canola | nucleus | 32.89 | 30.0 |
| CDY18912 | Canola | nucleus | 31.58 | 29.88 |
| CDX98330 | Canola | nucleus | 32.46 | 29.84 |
| CDY65347 | Canola | nucleus | 20.61 | 29.75 |
| CDX70651 | Canola | nucleus | 33.77 | 29.73 |
| CDY42841 | Canola | nucleus | 31.14 | 29.58 |
| CDX69499 | Canola | nucleus | 34.21 | 29.55 |
| CDY47002 | Canola | nucleus | 31.14 | 29.46 |
| CDY58690 | Canola | nucleus | 31.14 | 29.46 |
| CDY65811 | Canola | nucleus | 32.89 | 29.3 |
| CDY53885 | Canola | nucleus | 32.89 | 29.18 |
| CDX84935 | Canola | nucleus | 32.02 | 29.08 |
| CDY04164 | Canola | nucleus | 32.89 | 29.07 |
| CDY02185 | Canola | nucleus | 30.7 | 29.05 |
| CDY16832 | Canola | nucleus | 30.7 | 29.05 |
| CDY02978 | Canola | nucleus | 32.46 | 28.91 |
| CDX74754 | Canola | nucleus | 32.46 | 28.91 |
| CDX89097 | Canola | nucleus | 31.14 | 28.86 |
| CDY27603 | Canola | nucleus | 32.02 | 28.85 |
| CDY33554 | Canola | nucleus | 32.02 | 28.52 |
| CDX95960 | Canola | nucleus | 32.02 | 28.52 |
| CDY51202 | Canola | nucleus | 32.02 | 28.4 |
| CDY03905 | Canola | nucleus | 33.33 | 28.15 |
| CDY49254 | Canola | nucleus | 33.33 | 27.64 |
| CDY00082 | Canola | nucleus | 29.39 | 27.02 |
| CDX86353 | Canola | nucleus | 29.39 | 26.91 |
| CDY04265 | Canola | nucleus | 32.02 | 26.35 |
| CDX89005 | Canola | nucleus | 31.58 | 26.09 |
| CDX99406 | Canola | nucleus | 35.53 | 25.96 |
| CDY00589 | Canola | nucleus | 31.14 | 25.82 |
| CDY45899 | Canola | nucleus | 28.07 | 25.7 |
| CDY60297 | Canola | nucleus | 32.89 | 25.68 |
| CDY07357 | Canola | nucleus | 32.02 | 25.26 |
| CDY33113 | Canola | nucleus | 32.89 | 24.27 |
| CDY13236 | Canola | mitochondrion | 20.61 | 23.38 |
| CDX67765 | Canola | nucleus | 32.89 | 21.55 |
| CDY01574 | Canola | nucleus | 10.96 | 20.33 |
| CDY71878 | Canola | endoplasmic reticulum | 22.81 | 19.77 |
| CDY42485 | Canola | nucleus | 31.14 | 18.78 |
| CDY49686 | Canola | nucleus | 14.04 | 18.5 |
| CDX85287 | Canola | nucleus | 14.91 | 18.18 |
| CDY45709 | Canola | nucleus | 13.6 | 17.92 |
| CDY35780 | Canola | nucleus | 13.16 | 15.23 |
| CDY65346 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078GLZ3 | UniProt:A0A078GLZ3 | EnsemblPlants:CDY25613 | ProteinID:CDY25613 |
| ProteinID:CDY25613.1 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00032893001 | InterPro:IPR002100 |
| InterPro:IPR002487 | InterPro:IPR036879 | InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 |
| ScanProsite:PS00350 | PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF263 | SMART:SM00432 |
| SUPFAM:SSF55455 | InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EDAF80 | : |
Description
BnaA04g13050DBnaA04g13050D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GLZ3]
Coordinates
chrLK032177:+:280378..283436
Molecular Weight (calculated)
26316.6 Da
IEP (calculated)
9.097
GRAVY (calculated)
-0.752
Length
228 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGKIVIKR IDDSTSRQVT FSKRRKGLIK KAKELAILCD AEVGLIIFSN TDKLYDFASS SMKSAIERFN KTKMEQQQLL NPESEVMFWQ REAATLRQEL
101: HSLQENHRRQ LMGEQLNGLS VNELHNIEST LEMSLRGIRM KKEQMLTDEI KELTKKRNLI HHENLELSRK VQRIHQENVE LHKKAYATSN TNVLGLGELE
201: DAADESHAQV RLQLSQPEQS CYDSPSKS
101: HSLQENHRRQ LMGEQLNGLS VNELHNIEST LEMSLRGIRM KKEQMLTDEI KELTKKRNLI HHENLELSRK VQRIHQENVE LHKKAYATSN TNVLGLGELE
201: DAADESHAQV RLQLSQPEQS CYDSPSKS
001: MGRGKIVIQK IDDSTSRQVT FSKRRKGLIK KAKELAILCD AEVCLIIFSN TDKLYDFASS SVKSTIERFN TAKMEEQELM NPASEVKFWQ REAETLRQEL
101: HSLQENYRQL TGVELNGLSV KELQNIESQL EMSLRGIRMK REQILTNEIK ELTRKRNLVH HENLELSRKV QRIHQENVEL YKKAYGTSNT NGLGHHELVD
201: AVYESHAQVR LQLSQPEQSH YKTSSNS
101: HSLQENYRQL TGVELNGLSV KELQNIESQL EMSLRGIRMK REQILTNEIK ELTRKRNLVH HENLELSRKV QRIHQENVEL YKKAYGTSNT NGLGHHELVD
201: AVYESHAQVR LQLSQPEQSH YKTSSNS
Arabidopsis Description
AGL17AGL17 [Source:UniProtKB/TrEMBL;Acc:A0A178W215]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.