Factsheet for Solyc02g091550.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008950.2.1
Solyc01g093960.2.1
Solyc01g106170.2.1
Solyc02g071730.2.1
Solyc02g089200.2.1
Solyc02g091550.1.1
Solyc03g114830.2.1
Solyc04g076280.2.1
Solyc05g056620.1.1
Solyc06g069430.2.1
Solyc10g017640.1.1
Solyc10g077010.1.1
Solyc10g081170.1.1
Solyc11g032100.1.1
Solyc11g072240.1.1
Solyc12g099990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37940.1	Solyc05g056620.1.1	AT1G69120.1	15805477
AT4G37940.1	Solyc11g032100.1.1	AT1G71692.1	15805477
AT4G37940.1	Solyc01g008950.2.1	AT2G41090.1	17360592
AT4G37940.1	Solyc10g077010.1.1	AT2G41090.1	17360592
AT4G37940.1	Solyc10g081170.1.1	AT2G41090.1	17360592
AT4G37940.1	Solyc11g072240.1.1	AT2G41090.1	17360592
AT4G37940.1	Solyc12g099990.1.1	AT2G41090.1	17360592
AT4G37940.1	Solyc01g093960.2.1	AT2G45650.1	15805477
AT4G37940.1	Solyc10g017640.1.1	AT2G45660.1	15805477
AT4G37940.1	Solyc02g089200.2.1	AT3G02310.1	15805477
AT4G37940.1	Solyc01g106170.2.1	AT3G57230.1	15805477
AT4G37940.1	Solyc01g093960.2.1	AT3G61120.1	15805477
AT4G37940.1	Solyc02g071730.2.1	AT4G18960.1	15805477
AT4G37940.1	Solyc04g076280.2.1	AT4G24540.1	15805477
AT4G37940.1	Solyc02g091550.1.1	AT4G37940.1	15805477
AT4G37940.1	Solyc01g008950.2.1	AT5G21274.1	17360592
AT4G37940.1	Solyc10g077010.1.1	AT5G21274.1	17360592
AT4G37940.1	Solyc10g081170.1.1	AT5G21274.1	17360592
AT4G37940.1	Solyc11g072240.1.1	AT5G21274.1	17360592
AT4G37940.1	Solyc12g099990.1.1	AT5G21274.1	17360592
AT4G37940.1	Solyc03g114830.2.1	AT5G60910.1	15805477
AT4G37940.1	Solyc06g069430.2.1	AT5G60910.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0211g00180.t01	Wine grape	nucleus	67.23	70.54
Bra011797.1-P	Field mustard	nucleus	62.98	64.91
CDX69345	Canola	nucleus	62.55	64.76
CDX75686	Canola	nucleus	62.98	64.63
CDX90394	Canola	nucleus	62.98	64.63
Bra010623.1-P	Field mustard	nucleus	58.72	64.49
KRH39494	Soybean	nucleus	60.0	63.8
KRH74451	Soybean	nucleus	60.0	63.51
AT4G37940.1	Thale cress	nucleus	61.28	63.16
Bra039921.1-P	Field mustard	nucleus	60.85	63.0
Bra030222.1-P	Field mustard	nucleus	60.85	63.0
CDY25613	Canola	nucleus	60.85	62.72
AT2G22630.2	Thale cress	nucleus	60.0	62.11
CDX89496	Canola	nucleus	59.57	61.14
Solyc04g076700.2.1	Tomato	nucleus	31.91	56.82
Solyc01g106170.2.1	Tomato	mitochondrion	29.79	47.3
Solyc12g088090.1.1	Tomato	nucleus	44.68	47.3
Solyc03g019710.2.1	Tomato	nucleus	31.49	41.81
Solyc11g028020.1.1	Tomato	nucleus	38.72	40.81
Solyc05g012020.2.1	Tomato	nucleus	37.02	35.95
Solyc05g015750.2.1	Tomato	nucleus	36.17	35.27
Solyc06g069430.2.1	Tomato	nucleus	36.6	35.1
Solyc12g038510.1.1	Tomato	nucleus	37.02	34.8
Solyc01g093960.2.1	Tomato	nucleus	37.02	34.52
Solyc03g114830.2.1	Tomato	nucleus	36.17	34.41
Solyc02g071730.2.1	Tomato	nucleus	36.17	34.27
Solyc04g005320.2.1	Tomato	nucleus	34.47	34.03
Solyc03g114840.2.1	Tomato	nucleus	35.32	33.74
Solyc05g056620.1.1	Tomato	nucleus	34.89	33.61
Solyc02g065730.1.1	Tomato	nucleus	33.19	33.33
Solyc02g089200.2.1	Tomato	nucleus	34.04	32.52
Solyc07g055920.2.1	Tomato	nucleus	36.6	32.21
Solyc02g089210.2.1	Tomato	nucleus	33.62	31.6
Solyc06g064840.2.1	Tomato	nucleus	22.98	26.87

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	ncoils:Coil	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100
InterPro:IPR002487	InterPro:IPR036879	UniProt:K4BCV3	InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486
PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF263
SMART:SM00432	SUPFAM:SSF55455	EnsemblPlantsGene:Solyc02g091550.1	EnsemblPlants:Solyc02g091550.1.1	InterPro:TF_Kbox	InterPro:TF_MADSbox
InterPro:TF_MADSbox_sf	UniParc:UPI00027679A5	:	:	:	:

Description

No Description!

Coordinates

chr2:+:52810122..52817269

Molecular Weight (calculated)

27199.7 Da

IEP (calculated)

9.617

GRAVY (calculated)

-0.730

Length

235 amino acids

Sequence
(BLAST)

001: MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGLIIFSS TGKLYEFSNT SMKSVIERYN KTKDDCQQLH NPVSELKLWQ REAEILRQQL
101: QDLQDNHRQL LGEELSGLGV KELTNLENQL EMSLKGIRMK KEQILKDEIQ ELTRKGSIIH QENMELYKKV NLIRQENAEL YKKAYGARDA NAVNGNINYP
201: YRFTVSREVQ APIHLQLSQP EPQYFEMQAG TSDSR

Best Arabidopsis Sequence Match ( AT4G37940.1 )
(BLAST)

001: MGRGKIVIQR IDDSTSRQVT FSKRRKGLIK KAKELAILCD AEVGLIIFSS TGKLYDFASS SMKSVIDRYN KSKIEQQQLL NPASEVKFWQ REAAVLRQEL
101: HALQENHRQM MGEQLNGLSV NELNSLENQI EISLRGIRMR KEQLLTQEIQ ELSQKRNLIH QENLDLSRKV QRIHQENVEL YKKAYMANTN GFTHREVAVA
201: DDESHTQIRL QLSQPEHSDY DTPPRANE

Arabidopsis Description

AGL21Agamous-like MADS-box protein AGL21 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZJ6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.