Factsheet for Solyc05g056620.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g093960.2.1
Solyc01g106170.2.1
Solyc02g089200.2.1
Solyc02g091550.1.1
Solyc03g094090.2.1
Solyc04g005320.2.1
Solyc04g076280.2.1
Solyc05g012020.2.1
Solyc05g056620.1.1
Solyc06g059750.2.1
Solyc06g059760.2.1
Solyc10g017640.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26310.1	Solyc10g017640.1.1	AT2G45660.1	11439126
AT1G26310.1	Solyc10g017640.1.1	AT2G45660.1	15805477
AT1G26310.1	Solyc04g076280.2.1	AT4G24540.1	11439126
AT1G69120.1	Solyc06g059750.2.1	AT1G43850.1	16854969
AT1G69120.1	Solyc06g059760.2.1	AT1G43850.1	16854969
AT1G69120.1	Solyc05g056620.1.1	AT1G69120.1	15604664
AT1G69120.1	Solyc04g005320.2.1	AT2G03710.1	15805477
AT1G69120.1	Solyc05g012020.2.1	AT2G03710.1	15805477
AT1G69120.1	Solyc01g093960.2.1	AT2G45650.1	15805477
AT1G69120.1	Solyc10g017640.1.1	AT2G45660.1	11439126
AT1G69120.1	Solyc10g017640.1.1	AT2G45660.1	15805477
AT1G69120.1	Solyc02g089200.2.1	AT3G02310.1	15604664
AT1G69120.1	Solyc01g106170.2.1	AT3G57230.1	15805477
AT1G69120.1	Solyc04g076280.2.1	AT4G24540.1	11439126
AT1G69120.1	Solyc04g076280.2.1	AT4G24540.1	15805477
AT1G69120.1	Solyc02g091550.1.1	AT4G37940.1	15805477
AT1G69120.1	Solyc03g094090.2.1	AT5G65260.1	11439126

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400072888	Potato	nucleus	99.18	99.18
KRH75125	Soybean	nucleus	21.31	85.25
KRH07467	Soybean	nucleus	68.85	71.19
VIT_01s0011g00100.t01	Wine grape	nucleus	69.67	70.54
KRH45412	Soybean	nucleus	67.62	69.92
Bra004361.1-P	Field mustard	nucleus	52.46	67.72
KRH70974	Soybean	nucleus	65.57	65.84
CDY36077	Canola	nucleus	56.56	62.44
Bra038326.1-P	Field mustard	nucleus	64.75	61.72
CDY65811	Canola	nucleus	64.75	61.72
CDY34564	Canola	nucleus	54.92	61.47
AT1G69120.1	Thale cress	nucleus	64.34	61.33
CDY33554	Canola	nucleus	63.52	60.55
CDX95960	Canola	nucleus	62.7	59.77
Bra011021.1-P	Field mustard	nucleus	61.89	59.45
AT1G26310.1	Thale cress	nucleus	61.89	59.22
Solyc03g114830.2.1	Tomato	nucleus	59.84	59.11
Solyc06g069430.2.1	Tomato	nucleus	58.2	57.96
Solyc02g089210.2.1	Tomato	nucleus	58.2	56.8
Bra004007.1-P	Field mustard	nucleus	62.3	56.09
CDY04265	Canola	nucleus	63.52	55.96
CDY07357	Canola	nucleus	63.93	53.98
EER90862	Sorghum	nucleus	54.1	53.88
TraesCS5A01G391700.1	Wheat	nucleus	53.69	53.69
TraesCS2D01G262700.1	Wheat	nucleus	58.2	52.4
Zm00001d018667_P003	Maize	nucleus	58.2	52.4
EER95753	Sorghum	nucleus	57.79	52.22
Os07t0108900-02	Rice	nucleus	56.97	52.06
TraesCS2A01G261200.2	Wheat	nucleus	58.2	51.82
TraesCS2B01G281000.1	Wheat	nucleus	58.2	51.82
TraesCS5B01G396600.2	Wheat	nucleus	53.28	51.79
Solyc02g065730.1.1	Tomato	nucleus	49.59	51.71
GSMUA_Achr2P13650_001	Banana	nucleus	52.05	51.63
GSMUA_Achr4P23540_001	Banana	nucleus	52.46	51.61
GSMUA_Achr6P00050_001	Banana	nucleus	50.82	51.24
TraesCS5D01G401500.1	Wheat	cytosol, nucleus	53.28	51.18
EER97510	Sorghum	nucleus	52.87	50.99
Os03t0752800-02	Rice	nucleus	51.23	50.81
Zm00001d022088_P004	Maize	nucleus	52.46	49.61
GSMUA_Achr7P00460_001	Banana	nucleus	50.82	49.6
Os07t0605200-01	Rice	nucleus	49.59	48.59
GSMUA_Achr8P04330_001	Banana	nucleus	48.77	48.57
Zm00001d013259_P002	Maize	nucleus	54.1	47.31
TraesCS2D01G181400.3	Wheat	nucleus	51.64	47.19
TraesCS2B01G200800.1	Wheat	nucleus	51.64	47.19
TraesCS2A01G174300.3	Wheat	nucleus	51.64	47.19
Zm00001d007949_P001	Maize	nucleus	58.2	46.56
HORVU2Hr1G063800.7	Barley	nucleus, plastid	57.79	46.08
GSMUA_Achr10P...	Banana	nucleus	53.69	45.96
GSMUA_Achr3P30440_001	Banana	nucleus	41.8	44.35
Zm00001d034045_P003	Maize	nucleus	52.87	44.33
GSMUA_Achr3P02280_001	Banana	nucleus	47.54	44.11
Solyc04g005320.2.1	Tomato	nucleus	42.21	43.28
GSMUA_Achr3P25280_001	Banana	nucleus	46.31	42.48
HORVU5Hr1G095630.3	Barley	nucleus, plastid	53.28	42.35
Solyc05g012020.2.1	Tomato	nucleus	41.39	41.74
Solyc03g114840.2.1	Tomato	nucleus	41.39	41.06
Solyc03g019710.2.1	Tomato	nucleus	29.1	40.11
Solyc05g015750.2.1	Tomato	nucleus	39.34	39.83
Solyc12g038510.1.1	Tomato	nucleus	40.57	39.6
Solyc02g089200.2.1	Tomato	nucleus	39.75	39.43
Solyc01g093960.2.1	Tomato	nucleus	38.52	37.3
Os12t0501700-00	Rice	nucleus	35.25	36.91
KXG23502	Sorghum	nucleus	33.2	36.32
Solyc02g091550.1.1	Tomato	nucleus	33.61	34.89
Zm00001d023736_P001	Maize	nucleus	35.25	33.46
Solyc11g028020.1.1	Tomato	nucleus	30.33	33.18
Solyc02g071730.2.1	Tomato	nucleus	33.2	32.66
Solyc04g076700.2.1	Tomato	nucleus	15.98	29.55
Solyc07g055920.2.1	Tomato	nucleus	31.97	29.21
Solyc01g106170.2.1	Tomato	mitochondrion	15.57	25.68
Solyc12g088090.1.1	Tomato	nucleus	20.08	22.07
Solyc06g064840.2.1	Tomato	nucleus	14.75	17.91

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EMBL:AF448521	ProteinID:ASL04624.1	ncoils:Coil	GO:GO:0000977
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944
GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	InterPro:MADS_MEF2-like	PFAM:PF00319
PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945
PANTHER:PTHR11945:SF244	UniProt:Q8S4L5	SMART:SM00432	SUPFAM:SSF55455	EnsemblPlantsGene:Solyc05g056620.1	EnsemblPlants:Solyc05g056620.1.1
InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI00000A4A05	SEG:seg	:

Description

MADS-box transcription factor MADS-MC [Source:UniProtKB/TrEMBL;Acc:Q8S4L5]

Coordinates

chr5:-:5216722..5226350

Molecular Weight (calculated)

28662.2 Da

IEP (calculated)

8.435

GRAVY (calculated)

-0.855

Length

244 amino acids

Sequence
(BLAST)

001: MGRGKVELRK IENKINRQVT FSKRRGGLVK KAHEISVLCD AEVALIVFSQ KGKIFEYSSD SCMEQILERY ERYSYAERRL LANNSESPVQ ENWSLEYTKL
101: KARIDLLQRN HKHYMGEDLD SMSLKDLQNL EQQLDSALKL IRSRKNQLMH ESISELQKKE RAILEENNML TKKIKEKDKI VEQQGEWHQQ TNQVSTSTSF
201: LLQPHQCLNM GGNYQDEVAE ARRNNELDLN LDSLYPLYNM NKHL

Best Arabidopsis Sequence Match ( AT1G69120.1 )
(BLAST)

001: MGRGRVQLKR IENKINRQVT FSKRRAGLLK KAHEISVLCD AEVALVVFSH KGKLFEYSTD SCMEKILERY ERYSYAERQL IAPESDVNTN WSMEYNRLKA
101: KIELLERNQR HYLGEDLQAM SPKELQNLEQ QLDTALKHIR TRKNQLMYES INELQKKEKA IQEQNSMLSK QIKEREKILR AQQEQWDQQN QGHNMPPPLP
201: PQQHQIQHPY MLSHQPSPFL NMGGLYQEDD PMAMRRNDLE LTLEPVYNCN LGCFAA

Arabidopsis Description

AP1AP1 [Source:UniProtKB/TrEMBL;Acc:A0A178W846]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.