Factsheet for Solyc04g076280.2.1

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 5
nucleus 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g093960.2.1
Solyc01g106170.2.1
Solyc01g110530.2.1
Solyc02g071730.2.1
Solyc02g091550.1.1
Solyc03g114830.2.1
Solyc04g076280.2.1
Solyc05g056620.1.1
Solyc06g069430.2.1
Solyc10g017640.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24540.1	Solyc05g056620.1.1	AT1G26310.1	11439126
AT4G24540.1	Solyc05g056620.1.1	AT1G69120.1	11439126
AT4G24540.1	Solyc05g056620.1.1	AT1G69120.1	15805477
AT4G24540.1	Solyc01g110530.2.1	AT2G18040.1	20129060
AT4G24540.1	Solyc01g093960.2.1	AT2G45650.1	15805477
AT4G24540.1	Solyc10g017640.1.1	AT2G45660.1	15805477
AT4G24540.1	Solyc01g106170.2.1	AT3G57230.1	15805477
AT4G24540.1	Solyc02g071730.2.1	AT4G18960.1	15805477
AT4G24540.1	Solyc04g076280.2.1	AT4G24540.1	15805477
AT4G24540.1	Solyc02g091550.1.1	AT4G37940.1	15805477
AT4G24540.1	Solyc03g114830.2.1	AT5G60910.1	15805477
AT4G24540.1	Solyc06g069430.2.1	AT5G60910.1	15805477
AT4G24540.1	Solyc03g114830.2.1	AT5G60910.1	21798944
AT4G24540.1	Solyc06g069430.2.1	AT5G60910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400024247	Potato	nucleus	89.74	74.47
TraesCS4A01G002600.1	Wheat	nucleus	34.87	41.72
Os06t0217300-01	Rice	nucleus	43.08	37.67
Zm00001d018142_P001	Maize	nucleus	40.0	35.29
Os02t0761000-01	Rice	nucleus	41.03	35.09
Zm00001d052180_P001	Maize	nucleus	39.49	34.84
TraesCS6B01G343900.1	Wheat	cytosol	40.51	34.65
TraesCS6A01G313800.1	Wheat	nucleus	40.51	34.65
CDY03445	Canola	nucleus	38.97	34.39
TraesCS6D01G293200.1	Wheat	nucleus	40.0	34.21
KXG31156	Sorghum	nucleus	40.0	34.21
AT4G24540.1	Thale cress	nucleus	38.46	34.09
GSMUA_Achr3P06800_001	Banana	nucleus	40.0	34.06
KRH52935	Soybean	nucleus	40.51	33.76
HORVU6Hr1G077300.8	Barley	nucleus	39.49	33.48
GSMUA_Achr10P...	Banana	nucleus	38.97	33.33
Bra019221.1-P	Field mustard	nucleus	36.92	33.33
CDY11019	Canola	nucleus	36.92	33.33
Solyc11g010570.1.1	Tomato	nucleus	44.62	32.83
TraesCS4D01G301100.1	Wheat	nucleus	37.95	32.74
EER88077	Sorghum	nucleus	37.44	32.44
KXG40019	Sorghum	nucleus	38.46	32.33
TraesCS7D01G176700.1	Wheat	nucleus	37.44	32.3
TraesCS4B01G302600.2	Wheat	nucleus	37.44	32.02
Zm00001d027955_P001	Maize	extracellular, golgi	29.23	31.67
HORVU4Hr1G077850.13	Barley	nucleus	37.44	31.2
CDX92641	Canola	nucleus	36.41	31.0
VIT_18s0001g07460.t01	Wine grape	nucleus	49.74	30.31
TraesCS7A01G175200.2	Wheat	nucleus	36.41	29.58
Os03t0186600-01	Rice	nucleus	37.44	29.44
Zm00001d027957_P001	Maize	nucleus	37.95	29.25
TraesCS7B01G080300.2	Wheat	cytosol	35.9	29.05
HORVU7Hr1G036130.10	Barley	nucleus, plastid	34.36	27.92
GSMUA_Achr9P15180_001	Banana	nucleus	41.54	27.55
Solyc01g105800.2.1	Tomato	nucleus	31.28	21.86
KRH62216	Soybean	nucleus	2.56	7.58
Zm00001d044899_P001	Maize	nucleus	2.05	5.63

Protein Annotations

MapMan:35.1	ncoils:Coil	GO:GO:0000003	GO:GO:0000060	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0006355	GO:GO:0006810
GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628
GO:GO:0009719	GO:GO:0009739	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0010077
GO:GO:0010220	GO:GO:0043565	GO:GO:0045893	GO:GO:0046982	GO:GO:0048438	GO:GO:0048510
InterPro:IPR002487	UniProt:K4BU66	PFAM:PF01486	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF179
SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc04g076280.2	EnsemblPlants:Solyc04g076280.2.1	InterPro:TF_Kbox	UniParc:UPI0002765C6E	SEG:seg

Description

No Description!

Coordinates

chr4:+:61203256..61209308

Molecular Weight (calculated)

22060.8 Da

IEP (calculated)

4.628

GRAVY (calculated)

-0.433

Length

195 amino acids

Sequence
(BLAST)

001: MLLLSFFLLL ESYLILLAPE DMKDILGKYK LQSASLEKVD QPSLDLQLEN SLNMRLSKQV ADKTRELRQM RGEELEGLSL EELQQIEKRL EAGFNRVLEI
101: KGKRIMDEIT NLQRKGAELM EENKQLKHKM EIMKKGKLPL VTDMVMEEGQ SSESIITTNN PDQDDSSNAS LKLGGTTAVE DDCSITSLKL GLPFS

Best Arabidopsis Sequence Match ( AT2G22540.2 )
(BLAST)

001: MAREKIQIRK IDNATARQVT FSKRRRGLFK KAEELSVLCD ADVALIIFSS TGKLFDMKEV LERHNLQSKN LEKLDQPSLE LQLVENSDHA RMSKEIADKS
101: HRLRQMRGEE LQGLDIEELQ QLEKALETGL TRVIETKSDK IMSEISELQK KGMQLMDENK RLRQQGTQLT EENERLGMQI CNNVHAHGGA ESENAAVYEE
201: GQSSESITNA GNSTGAPVDS ESSDTSLRLG LPYGG

Arabidopsis Description

SVPAt2g22540 [Source:UniProtKB/TrEMBL;Acc:A7XFU1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.