Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400041773 | Potato | nucleus | 83.02 | 92.44 |
| GSMUA_Achr3P06800_001 | Banana | nucleus | 52.45 | 60.7 |
| Zm00001d044899_P001 | Maize | nucleus | 16.23 | 60.56 |
| GSMUA_Achr10P... | Banana | nucleus | 51.7 | 60.09 |
| Zm00001d052180_P001 | Maize | nucleus | 48.68 | 58.37 |
| Zm00001d018142_P001 | Maize | nucleus | 47.92 | 57.47 |
| TraesCS6A01G313800.1 | Wheat | nucleus | 48.3 | 56.14 |
| KXG31156 | Sorghum | nucleus | 47.92 | 55.7 |
| TraesCS6D01G293200.1 | Wheat | nucleus | 47.92 | 55.7 |
| TraesCS6B01G343900.1 | Wheat | cytosol | 47.92 | 55.7 |
| Os02t0761000-01 | Rice | nucleus | 47.17 | 54.82 |
| HORVU6Hr1G077300.8 | Barley | nucleus | 47.55 | 54.78 |
| Os06t0217300-01 | Rice | nucleus | 45.66 | 54.26 |
| TraesCS7D01G176700.1 | Wheat | nucleus | 44.53 | 52.21 |
| TraesCS4D01G301100.1 | Wheat | nucleus | 43.02 | 50.44 |
| EER88077 | Sorghum | nucleus | 41.89 | 49.33 |
| TraesCS7A01G175200.2 | Wheat | nucleus | 44.53 | 49.17 |
| TraesCS4B01G302600.2 | Wheat | nucleus | 42.26 | 49.12 |
| TraesCS7B01G080300.2 | Wheat | cytosol | 44.15 | 48.55 |
| GSMUA_Achr9P15180_001 | Banana | nucleus | 53.58 | 48.3 |
| HORVU4Hr1G077850.13 | Barley | nucleus | 42.26 | 47.86 |
| TraesCS4A01G002600.1 | Wheat | nucleus | 29.06 | 47.24 |
| Os03t0186600-01 | Rice | nucleus | 43.4 | 46.37 |
| KXG40019 | Sorghum | nucleus | 40.38 | 46.12 |
| Solyc04g076280.2.1 | Tomato | vacuole | 32.83 | 44.62 |
| Zm00001d027957_P001 | Maize | nucleus | 41.13 | 43.08 |
| Solyc01g105800.2.1 | Tomato | nucleus | 41.51 | 39.43 |
| Zm00001d027955_P001 | Maize | extracellular, golgi | 22.26 | 32.78 |
| HORVU7Hr1G036130.10 | Barley | nucleus, plastid | 28.3 | 31.25 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | ProteinID:AAG09811.1 | ncoils:Coil | GO:GO:0000003 | GO:GO:0000900 |
| GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006412 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009266 | GO:GO:0009628 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009910 |
| GO:GO:0009987 | GO:GO:0017148 | GO:GO:0019538 | GO:GO:0043565 | GO:GO:0045182 | GO:GO:0045892 |
| GO:GO:0045944 | GO:GO:0046983 | GO:GO:0048438 | InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 |
| InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 |
| PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF179 | UniProt:Q9FUY6 | SMART:SM00432 | SUPFAM:SSF55455 |
| EnsemblPlantsGene:Solyc11g010570.1 | EnsemblPlants:Solyc11g010570.1.1 | InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0000049DC3 |
| SEG:seg | : | : | : | : | : |
Description
JMADS-box protein JOINTLESS [Source:UniProtKB/Swiss-Prot;Acc:Q9FUY6]
Coordinates
chr11:+:3640857..3645766
Molecular Weight (calculated)
30428.1 Da
IEP (calculated)
7.389
GRAVY (calculated)
-0.898
Length
265 amino acids
Sequence
(BLAST)
(BLAST)
001: MAREKIQIKK IDNSTARQVT FSKRRRGLFK KAEELSVLCD ADVALIIFSS TGKLFDYSSS SMKQILERRD LHSKNLEKLD QPSLELQLVE NSNYSRLSKE
101: ISEKSHRLRQ MRGEELQGLN IEELQQLERS LETGLSRVIE RKGDKIMREI NQLQQKGMHL MEENEKLRQQ VMEISNNNNN NNNGYREAGV VIFEPENGFN
201: NNNNEDGQSS ESVTNPCNSI DPPPQDDDSS DTSLKLGLAT LLRLKRSKAR CGYFCMLLEE GEKKK
101: ISEKSHRLRQ MRGEELQGLN IEELQQLERS LETGLSRVIE RKGDKIMREI NQLQQKGMHL MEENEKLRQQ VMEISNNNNN NNNGYREAGV VIFEPENGFN
201: NNNNEDGQSS ESVTNPCNSI DPPPQDDDSS DTSLKLGLAT LLRLKRSKAR CGYFCMLLEE GEKKK
001: MAREKIQIRK IDNATARQVT FSKRRRGLFK KAEELSVLCD ADVALIIFSS TGKLFEFCSS SMKEVLERHN LQSKNLEKLD QPSLELQLVE NSDHARMSKE
101: IADKSHRLRQ MRGEELQGLD IEELQQLEKA LETGLTRVIE TKSDKIMSEI SELQKKGMQL MDENKRLRQQ GTQLTEENER LGMQICNNVH AHGGAESENA
201: AVYEEGQSSE SITNAGNSTG APVDSESSDT SLRLGLPYGG
101: IADKSHRLRQ MRGEELQGLD IEELQQLEKA LETGLTRVIE TKSDKIMSEI SELQKKGMQL MDENKRLRQQ GTQLTEENER LGMQICNNVH AHGGAESENA
201: AVYEEGQSSE SITNAGNSTG APVDSESSDT SLRLGLPYGG
Arabidopsis Description
SVPAt2g22540 [Source:UniProtKB/TrEMBL;Acc:A7XFU1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.