Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G301100.1 | Wheat | nucleus | 98.16 | 70.8 |
| TraesCS4B01G302600.2 | Wheat | nucleus | 96.32 | 68.86 |
| HORVU4Hr1G077850.13 | Barley | nucleus | 92.02 | 64.1 |
| Zm00001d027955_P001 | Maize | extracellular, golgi | 55.21 | 50.0 |
| Os03t0186600-01 | Rice | nucleus | 74.85 | 49.19 |
| KXG40019 | Sorghum | nucleus | 69.33 | 48.71 |
| Zm00001d027957_P001 | Maize | nucleus | 69.94 | 45.06 |
| CDY25607 | Canola | nucleus | 45.4 | 42.29 |
| TraesCS6A01G313800.1 | Wheat | nucleus | 52.76 | 37.72 |
| Solyc04g076280.2.1 | Tomato | vacuole | 41.72 | 34.87 |
| GSMUA_Achr10P... | Banana | nucleus | 48.47 | 34.65 |
| GSMUA_Achr3P06800_001 | Banana | nucleus | 48.47 | 34.5 |
| VIT_00s0313g00070.t01 | Wine grape | nucleus | 47.85 | 34.36 |
| VIT_03s0167g00070.t01 | Wine grape | nucleus | 38.04 | 33.88 |
| PGSC0003DMT400041773 | Potato | nucleus | 47.85 | 32.77 |
| KRH74496 | Soybean | nucleus | 45.4 | 32.6 |
| KRH69674 | Soybean | nucleus | 45.4 | 32.6 |
| CDY13746 | Canola | nucleus | 46.63 | 32.2 |
| Bra038511.1-P | Field mustard | nucleus | 46.63 | 31.54 |
| Bra030228.1-P | Field mustard | nucleus | 45.4 | 31.36 |
| AT2G22540.1 | Thale cress | nucleus | 46.01 | 31.25 |
| CDX89487 | Canola | nucleus | 44.79 | 30.93 |
| CDX76906 | Canola | nucleus | 44.17 | 30.51 |
| TraesCS7A01G175200.2 | Wheat | nucleus | 44.79 | 30.42 |
| KRH42097 | Soybean | nucleus | 38.04 | 30.24 |
| KRH52935 | Soybean | nucleus | 42.33 | 29.49 |
| Solyc11g010570.1.1 | Tomato | nucleus | 47.24 | 29.06 |
| KRH49819 | Soybean | nucleus | 36.2 | 28.64 |
| PGSC0003DMT400024247 | Potato | nucleus | 41.1 | 28.51 |
| CDY03445 | Canola | nucleus | 38.04 | 28.05 |
| Bra019221.1-P | Field mustard | nucleus | 34.97 | 26.39 |
| CDY11019 | Canola | nucleus | 34.97 | 26.39 |
| AT4G24540.1 | Thale cress | nucleus | 35.58 | 26.36 |
| GSMUA_Achr9P15180_001 | Banana | nucleus | 46.63 | 25.85 |
| KRH10603 | Soybean | nucleus | 32.52 | 25.48 |
| KRH21764 | Soybean | nucleus | 31.9 | 25.24 |
| CDX92641 | Canola | nucleus | 34.36 | 24.45 |
| VIT_15s0107g00120.t01 | Wine grape | nucleus | 26.99 | 24.44 |
| PGSC0003DMT400083739 | Potato | nucleus | 33.13 | 24.43 |
| VIT_18s0001g07460.t01 | Wine grape | nucleus | 46.01 | 23.44 |
| KRH10606 | Soybean | nucleus | 25.77 | 19.91 |
| Solyc01g105800.2.1 | Tomato | nucleus | 31.29 | 18.28 |
| KRH21757 | Soybean | nucleus | 26.38 | 17.34 |
| VIT_03s0017g00440.t01 | Wine grape | nucleus | 9.2 | 15.96 |
| VIT_15s0024g02000.t01 | Wine grape | nucleus | 1.84 | 3.49 |
| VIT_15s0024g01860.t01 | Wine grape | nucleus | 1.23 | 3.08 |
| KRH62216 | Soybean | nucleus | 1.23 | 3.03 |
| VIT_00s0729g00010.t01 | Wine grape | nucleus | 0.61 | 1.61 |
| VIT_03s0017g00450.t01 | Wine grape | nucleus | 0.61 | 1.33 |
| VIT_03s0017g00360.t01 | Wine grape | nucleus | 0.0 | 0.0 |
| VIT_03s0167g00100.t01 | Wine grape | nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G002600.1 | EnsemblPlantsGene:TraesCS4A01G002600 | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR002487 | InterPro:TF_Kbox | ncoils:Coil | PANTHER:PTHR11945 |
| PANTHER:PTHR11945:SF179 | PFAM:PF01486 | PFscan:PS51297 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr4A:+:2402444..2412218
Molecular Weight (calculated)
18478.7 Da
IEP (calculated)
4.605
GRAVY (calculated)
-0.804
Length
163 amino acids
Sequence
(BLAST)
(BLAST)
001: MNQIIDRYNS HSKILKKADE PSQLDLHEDS NCARLRDELA EASLWLQQMR GEELQSLNVQ QLQALEKSLE SGLGSVLKTK SQKIMDQISE LERKRVQLIE
101: ENARLKEQAS KMEMQVAADS PVVYEEGQSS ESVTNTSYPR PPLDTEDSSD TSLRLGLPLY NSK
101: ENARLKEQAS KMEMQVAADS PVVYEEGQSS ESVTNTSYPR PPLDTEDSSD TSLRLGLPLY NSK
001: MAREKIQIRK IDNATARQVT FSKRRRGLFK KAEELSVLCD ADVALIIFSS TGKLFDMKEV LERHNLQSKN LEKLDQPSLE LQLVENSDHA RMSKEIADKS
101: HRLRQMRGEE LQGLDIEELQ QLEKALETGL TRVIETKSDK IMSEISELQK KGMQLMDENK RLRQQGTQLT EENERLGMQI CNNVHAHGGA ESENAAVYEE
201: GQSSESITNA GNSTGAPVDS ESSDTSLRLG LPYGG
101: HRLRQMRGEE LQGLDIEELQ QLEKALETGL TRVIETKSDK IMSEISELQK KGMQLMDENK RLRQQGTQLT EENERLGMQI CNNVHAHGGA ESENAAVYEE
201: GQSSESITNA GNSTGAPVDS ESSDTSLRLG LPYGG
Arabidopsis Description
SVPAt2g22540 [Source:UniProtKB/TrEMBL;Acc:A7XFU1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.