Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G351500.1 | Wheat | nucleus | 72.95 | 92.07 |
| TraesCS5A01G520200.1 | Wheat | nucleus, plastid | 84.54 | 86.63 |
| HORVU3Hr1G095240.2 | Barley | nucleus | 65.22 | 84.91 |
| TraesCS3D01G428000.1 | Wheat | nucleus | 64.73 | 84.28 |
| TraesCS3D01G427900.1 | Wheat | nucleus | 67.15 | 83.23 |
| TraesCS3D01G427700.1 | Wheat | mitochondrion, nucleus | 63.28 | 78.92 |
| Os01t0922800-01 | Rice | nucleus | 57.0 | 71.95 |
| OQU86329 | Sorghum | nucleus | 52.17 | 63.16 |
| Zm00001d039913_P002 | Maize | nucleus | 52.66 | 62.64 |
| TraesCS7D01G037000.1 | Wheat | cytosol | 18.36 | 62.3 |
| Solyc10g017640.1.1 | Tomato | nucleus | 17.87 | 60.66 |
| KRH48297 | Soybean | nucleus | 22.71 | 52.81 |
| GSMUA_Achr8P09250_001 | Banana | nucleus | 28.02 | 46.03 |
| TraesCS7D01G261900.1 | Wheat | nucleus | 36.72 | 34.7 |
| KRH00625 | Soybean | nucleus | 30.92 | 30.62 |
| KRH40554 | Soybean | nucleus | 30.92 | 30.33 |
| TraesCS4D01G341700.1 | Wheat | nucleus | 31.4 | 29.28 |
| CDY69077 | Canola | nucleus | 28.99 | 28.17 |
| CDY37054 | Canola | nucleus | 28.99 | 28.17 |
| Bra039324.1-P | Field mustard | nucleus | 28.99 | 28.17 |
| AT2G45660.1 | Thale cress | nucleus | 28.99 | 28.04 |
| CDY60689 | Canola | nucleus | 28.5 | 27.7 |
| CDY27368 | Canola | nucleus | 28.5 | 27.7 |
| CDX74755 | Canola | nucleus | 28.5 | 27.7 |
| Bra004928.1-P | Field mustard | nucleus | 28.5 | 27.7 |
| Bra000393.1-P | Field mustard | nucleus | 28.5 | 27.7 |
| CDY53886 | Canola | nucleus | 28.5 | 27.7 |
| TraesCS6D01G014600.1 | Wheat | nucleus | 34.3 | 27.41 |
| TraesCS1D01G203300.2 | Wheat | nucleus | 29.95 | 26.96 |
| TraesCS1D01G203400.1 | Wheat | nucleus | 29.95 | 26.84 |
| PGSC0003DMT400000028 | Potato | nucleus | 27.05 | 25.0 |
| KRH65189 | Soybean | nucleus | 28.5 | 24.89 |
| PGSC0003DMT400026576 | Potato | nucleus | 25.12 | 24.3 |
| KRH48299 | Soybean | nucleus | 5.8 | 8.76 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR036879 |
| InterPro:MADS_MEF2-like | PFAM:PF00319 | PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF359 |
| SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | EnsemblPlantsGene:TraesCS4D01G346300 | EnsemblPlants:TraesCS4D01G346300.1 |
| TIGR:cd00265 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr4D:+:500311430..500313765
Molecular Weight (calculated)
22802.6 Da
IEP (calculated)
8.445
GRAVY (calculated)
-0.750
Length
207 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGPVPSLSL IFARSPLHPI IERRTPASER QPEEEEARRG IARRGPVELR RIEDRTSRQV RFSKRRSGLF KKAFELGLLC DAEVALLVFS PAGRLYEYAS
101: SSIEDTYDRY QAFGGAGKNL NEGGASTNSD GDPSNIQSRL KEIASWSLQN NADDADASEL EKLEKLLTDA LENTKSKKML AQRNSGARTS ASGANSISLR
201: GQEEGRS
101: SSIEDTYDRY QAFGGAGKNL NEGGASTNSD GDPSNIQSRL KEIASWSLQN NADDADASEL EKLEKLLTDA LENTKSKKML AQRNSGARTS ASGANSISLR
201: GQEEGRS
001: MVRGKTQMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVSLIIFSP KGKLYEFASS NMQDTIDRYL RHTKDRVSTK PVSEENMQHL KYEAANMMKK
101: IEQLEASKRK LLGEGIGTCS IEELQQIEQQ LEKSVKCIRA RKTQVFKEQI EQLKQKVK
101: IEQLEASKRK LLGEGIGTCS IEELQQIEQQ LEKSVKCIRA RKTQVFKEQI EQLKQKVK
Arabidopsis Description
SOC1SOC1 [Source:UniProtKB/TrEMBL;Acc:A0A178VZL4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.