Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g017640.1.1 | Tomato | nucleus | 57.38 | 57.38 |
| KRH48297 | Soybean | nucleus | 67.21 | 46.07 |
| TraesCS3D01G428000.1 | Wheat | nucleus | 60.66 | 23.27 |
| TraesCS3D01G427700.1 | Wheat | mitochondrion, nucleus | 60.66 | 22.29 |
| TraesCS3D01G427900.1 | Wheat | nucleus | 60.66 | 22.16 |
| TraesCS4D01G341700.1 | Wheat | nucleus | 72.13 | 19.82 |
| TraesCS1D01G203300.2 | Wheat | nucleus | 73.77 | 19.57 |
| KRH00625 | Soybean | nucleus | 65.57 | 19.14 |
| KRH40554 | Soybean | nucleus | 65.57 | 18.96 |
| Bra000393.1-P | Field mustard | nucleus | 65.57 | 18.78 |
| Bra039324.1-P | Field mustard | nucleus | 65.57 | 18.78 |
| CDY37054 | Canola | nucleus | 65.57 | 18.78 |
| CDY53886 | Canola | nucleus | 65.57 | 18.78 |
| CDY60689 | Canola | nucleus | 65.57 | 18.78 |
| TraesCS7D01G261900.1 | Wheat | nucleus | 67.21 | 18.72 |
| AT2G45660.1 | Thale cress | nucleus | 65.57 | 18.69 |
| GSMUA_Achr1P24070_001 | Banana | nucleus | 63.93 | 18.4 |
| TraesCS4D01G346300.1 | Wheat | nucleus | 62.3 | 18.36 |
| CDY69077 | Canola | nucleus | 63.93 | 18.31 |
| CDY27368 | Canola | nucleus | 63.93 | 18.31 |
| CDX74755 | Canola | nucleus | 63.93 | 18.31 |
| Bra004928.1-P | Field mustard | nucleus | 63.93 | 18.31 |
| TraesCS1D01G203400.1 | Wheat | nucleus | 67.21 | 17.75 |
| PGSC0003DMT400000028 | Potato | nucleus | 63.93 | 17.41 |
| KRH65189 | Soybean | nucleus | 65.57 | 16.88 |
| PGSC0003DMT400026576 | Potato | nucleus | 57.38 | 16.36 |
| TraesCS6D01G014600.1 | Wheat | nucleus | 63.93 | 15.06 |
| KRH48299 | Soybean | nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G037000.1 | EnsemblPlantsGene:TraesCS7D01G037000 | Gene3D:3.40.1810.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR036879 | InterPro:TF_MADSbox |
| InterPro:TF_MADSbox_sf | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF341 | PFAM:PF00319 | PFscan:PS50066 | PRINTS:PR00404 |
| SMART:SM00432 | SUPFAM:SSF55455 | MapMan:15.5.14 | : | : | : |
Description
No Description!
Coordinates
chr7D:+:18857672..18869661
Molecular Weight (calculated)
6723.2 Da
IEP (calculated)
10.471
GRAVY (calculated)
-0.121
Length
61 amino acids
Sequence
(BLAST)
(BLAST)
1: MGRGKTQVKL IEDRTSQQVP FSKLRSGLHR KAFQLSVLCD AEIALVVFSP GGRLYEFANA G
001: MVRGKTQMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVSLIIFSP KGKLYEFASS NMQDTIDRYL RHTKDRVSTK PVSEENMQHL KYEAANMMKK
101: IEQLEASKRK LLGEGIGTCS IEELQQIEQQ LEKSVKCIRA RKTQVFKEQI EQLKQKVK
101: IEQLEASKRK LLGEGIGTCS IEELQQIEQQ LEKSVKCIRA RKTQVFKEQI EQLKQKVK
Arabidopsis Description
SOC1SOC1 [Source:UniProtKB/TrEMBL;Acc:A0A178VZL4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.