Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G028200.1 | Wheat | nucleus | 56.62 | 53.45 |
| TraesCS4A01G058900.1 | Wheat | nucleus | 40.64 | 52.35 |
| OQU93000 | Sorghum | nucleus | 57.99 | 52.26 |
| TraesCS4A01G028100.1 | Wheat | nucleus | 57.53 | 52.07 |
| TraesCS7A01G122000.1 | Wheat | nucleus | 50.68 | 48.9 |
| Zm00001d048082_P001 | Maize | nucleus | 54.79 | 47.62 |
| TraesCS7A01G122100.1 | Wheat | nucleus | 48.86 | 47.14 |
| Zm00001d028217_P001 | Maize | nucleus | 54.79 | 46.51 |
| Solyc03g114840.2.1 | Tomato | nucleus | 41.1 | 36.59 |
| PGSC0003DMT400063315 | Potato | nucleus | 40.64 | 36.18 |
| GSMUA_Achr7P26700_001 | Banana | nucleus | 37.9 | 34.87 |
| GSMUA_Achr4P14460_001 | Banana | nucleus | 36.99 | 33.75 |
| VIT_17s0000g05000.t01 | Wine grape | nucleus | 37.9 | 33.74 |
| TraesCS5A01G391800.1 | Wheat | nucleus | 35.16 | 32.35 |
| CDY45709 | Canola | nucleus | 25.11 | 31.79 |
| CDY49686 | Canola | nucleus | 25.11 | 31.79 |
| KRH70973 | Soybean | nucleus | 35.16 | 31.56 |
| TraesCS5A01G286800.1 | Wheat | nucleus | 36.07 | 31.35 |
| KRH75123 | Soybean | nucleus | 34.25 | 30.49 |
| Bra017376.1-P | Field mustard | nucleus | 31.51 | 28.4 |
| AT2G03710.1 | Thale cress | nucleus | 33.33 | 28.29 |
| TraesCS7A01G260600.1 | Wheat | nucleus | 31.96 | 28.23 |
| CDY04164 | Canola | nucleus | 32.88 | 27.91 |
| Bra026543.1-P | Field mustard | nucleus | 34.25 | 27.88 |
| CDY02978 | Canola | nucleus | 32.42 | 27.73 |
| CDY51202 | Canola | nucleus | 32.42 | 27.63 |
| Bra025126.1-P | Field mustard | nucleus | 31.96 | 27.24 |
| TraesCS2A01G174300.3 | Wheat | nucleus | 30.14 | 24.72 |
| CDY33113 | Canola | nucleus | 32.88 | 23.3 |
| TraesCS6A01G259000.2 | Wheat | nucleus | 30.14 | 22.76 |
| TraesCS5A01G391700.1 | Wheat | nucleus | 25.11 | 22.54 |
| TraesCS2A01G261200.2 | Wheat | nucleus | 27.4 | 21.9 |
| TraesCS2A01G337900.1 | Wheat | nucleus | 21.92 | 20.0 |
| TraesCS1A01G125800.1 | Wheat | nucleus | 24.2 | 19.7 |
| TraesCS5A01G117500.1 | Wheat | nucleus | 21.92 | 18.9 |
| TraesCS1A01G045000.1 | Wheat | nucleus | 16.89 | 18.69 |
| TraesCS1A01G262700.1 | Wheat | endoplasmic reticulum | 22.83 | 18.18 |
| TraesCS7A01G111800.1 | Wheat | nucleus | 18.72 | 17.83 |
| TraesCS7A01G111900.1 | Wheat | nucleus | 18.72 | 17.83 |
| TraesCS7A01G111700.1 | Wheat | nucleus | 19.18 | 17.65 |
| TraesCS1A01G044900.1 | Wheat | nucleus | 19.18 | 17.28 |
| TraesCS3A01G314300.1 | Wheat | nucleus | 21.46 | 17.22 |
| TraesCS6A01G292300.2 | Wheat | nucleus | 18.26 | 16.6 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G078700.1 | EnsemblPlantsGene:TraesCS4A01G078700 | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR002487 | InterPro:TF_Kbox | ncoils:Coil | PANTHER:PTHR11945 |
| PANTHER:PTHR11945:SF206 | PFAM:PF01486 | PFscan:PS51297 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr4A:+:79051380..79054461
Molecular Weight (calculated)
25184.6 Da
IEP (calculated)
7.128
GRAVY (calculated)
-1.016
Length
219 amino acids
Sequence
(BLAST)
(BLAST)
001: MAIRPQEMRQ IADGTGKRRR NPRVGLAYGR GNSMYKTLER YRTCNCNSQE ATPLAENEIN YQQYLKLKTR LEYLESSQRN ILGEDLGPLS MKELEQIENQ
101: IDISLKHIRT RKNKVLLDEL YDLKSKEQEL QDQNKDLRKK LQDTSCAENA LHMAWQDRGQ SSSSGHAIDT TYPGLVQHPE HDSSMQVGYN NQVYVDQPNN
201: NEDMASQRLH GLGTSAGWI
101: IDISLKHIRT RKNKVLLDEL YDLKSKEQEL QDQNKDLRKK LQDTSCAENA LHMAWQDRGQ SSSSGHAIDT TYPGLVQHPE HDSSMQVGYN NQVYVDQPNN
201: NEDMASQRLH GLGTSAGWI
001: MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVSLIVFSN RGKLYEFCST SNMLKTLERY QKCSYGSIEV NNKPAKELEN SYREYLKLKG
101: RYENLQRQQR NLLGEDLGPL NSKELEQLER QLDGSLKQVR CIKTQYMLDQ LSDLQGKEHI LLDANRALSM KLEDMIGVRH HHIGGGWEGG DQQNIAYGHP
201: QAHSQGLYQS LECDPTLQIG YSHPVCSEQM AVTVQGQSQQ GNGYIPGWML
101: RYENLQRQQR NLLGEDLGPL NSKELEQLER QLDGSLKQVR CIKTQYMLDQ LSDLQGKEHI LLDANRALSM KLEDMIGVRH HHIGGGWEGG DQQNIAYGHP
201: QAHSQGLYQS LECDPTLQIG YSHPVCSEQM AVTVQGQSQQ GNGYIPGWML
Arabidopsis Description
SEP2SEP2 [Source:UniProtKB/TrEMBL;Acc:A0A178V680]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.