Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G021100.1 | Wheat | nucleus | 21.85 | 78.79 |
| TraesCS7B01G020900.1 | Wheat | nucleus | 22.27 | 76.81 |
| GSMUA_Achr4P14460_001 | Banana | nucleus | 64.29 | 63.75 |
| GSMUA_Achr8P28100_001 | Banana | nucleus | 61.34 | 60.83 |
| Zm00001d045231_P002 | Maize | nucleus | 54.2 | 57.33 |
| EER89250 | Sorghum | nucleus | 53.78 | 56.89 |
| TraesCS4B01G245700.1 | Wheat | nucleus | 51.26 | 56.48 |
| GSMUA_Achr3P15930_001 | Banana | nucleus | 56.72 | 56.25 |
| Os06t0162800-01 | Rice | nucleus | 52.94 | 56.0 |
| GSMUA_Achr2P06250_001 | Banana | nucleus | 52.94 | 55.75 |
| VIT_17s0000g05000.t01 | Wine grape | nucleus | 57.56 | 55.69 |
| OQU93000 | Sorghum | nucleus | 56.3 | 55.14 |
| TraesCS7D01G120500.1 | Wheat | nucleus | 52.52 | 55.07 |
| TraesCS7A01G122100.1 | Wheat | nucleus | 52.1 | 54.63 |
| GSMUA_Achr9P01370_001 | Banana | nucleus | 55.46 | 54.32 |
| TraesCS7A01G122000.1 | Wheat | nucleus | 51.68 | 54.19 |
| TraesCS7B01G020800.1 | Wheat | nucleus | 51.68 | 54.19 |
| GSMUA_Achr11P... | Banana | nucleus | 53.36 | 54.04 |
| TraesCS4D01G243700.1 | Wheat | nucleus | 50.84 | 53.78 |
| Solyc03g114840.2.1 | Tomato | nucleus | 55.04 | 53.25 |
| PGSC0003DMT400063315 | Potato | nucleus | 55.04 | 53.25 |
| Os03t0215400-01 | Rice | nucleus | 57.14 | 52.92 |
| Zm00001d048082_P001 | Maize | nucleus | 55.88 | 52.78 |
| KRH70973 | Soybean | nucleus | 53.36 | 52.05 |
| KRH75123 | Soybean | nucleus | 53.78 | 52.03 |
| TraesCS7D01G120600.1 | Wheat | nucleus | 49.58 | 51.98 |
| Zm00001d028217_P001 | Maize | nucleus | 54.62 | 50.39 |
| TraesCS4D01G276100.1 | Wheat | nucleus | 50.84 | 50.21 |
| TraesCS4D01G245200.1 | Wheat | nucleus | 52.1 | 50.0 |
| TraesCS4A01G028200.1 | Wheat | nucleus | 47.9 | 49.14 |
| TraesCS4B01G245800.1 | Wheat | nucleus | 50.42 | 48.58 |
| GSMUA_Achr4P30120_001 | Banana | nucleus | 47.9 | 48.51 |
| TraesCS4A01G028100.1 | Wheat | nucleus | 49.16 | 48.35 |
| GSMUA_Achr1P00750_001 | Banana | nucleus | 48.74 | 47.93 |
| TraesCS4B01G277800.1 | Wheat | nucleus | 49.58 | 47.77 |
| TraesCS4A01G058900.1 | Wheat | nucleus | 34.03 | 47.65 |
| GSMUA_Achr2P04350_001 | Banana | nucleus | 47.48 | 47.08 |
| GSMUA_Achr1P24060_001 | Banana | nucleus | 47.9 | 46.72 |
| GSMUA_Achr2P10250_001 | Banana | nucleus | 47.48 | 46.69 |
| AT2G03710.1 | Thale cress | nucleus | 50.42 | 46.51 |
| Bra025126.1-P | Field mustard | nucleus | 50.0 | 46.3 |
| CDY04164 | Canola | nucleus | 50.0 | 46.12 |
| CDY02978 | Canola | nucleus | 49.58 | 46.09 |
| CDY51202 | Canola | nucleus | 49.16 | 45.53 |
| GSMUA_Achr5P06590_001 | Banana | nucleus | 33.19 | 45.14 |
| HORVU7Hr1G025700.6 | Barley | nucleus | 52.1 | 44.93 |
| Bra026543.1-P | Field mustard | nucleus | 50.42 | 44.61 |
| GSMUA_Achr9P29310_001 | Banana | nucleus | 29.41 | 42.68 |
| GSMUA_Achr4P23540_001 | Banana | nucleus | 43.7 | 41.94 |
| Bra017376.1-P | Field mustard | nucleus | 42.44 | 41.56 |
| GSMUA_Achr10P... | Banana | nucleus | 20.59 | 41.53 |
| GSMUA_Achr2P13650_001 | Banana | nucleus | 42.86 | 41.46 |
| GSMUA_Achr6P00050_001 | Banana | nucleus | 42.02 | 41.32 |
| TraesCS7B01G021000.1 | Wheat | nucleus | 32.35 | 41.18 |
| GSMUA_Achr7P00460_001 | Banana | nucleus | 42.44 | 40.4 |
| HORVU4Hr1G067680.14 | Barley | nucleus | 46.64 | 39.08 |
| GSMUA_Achr6P06040_001 | Banana | nucleus | 38.24 | 38.56 |
| CDY33113 | Canola | nucleus | 49.58 | 38.19 |
| GSMUA_Achr10P... | Banana | nucleus | 36.55 | 37.99 |
| TraesCS4A01G078700.1 | Wheat | nucleus | 34.87 | 37.9 |
| GSMUA_Achr3P30440_001 | Banana | nucleus | 36.13 | 37.39 |
| GSMUA_Achr10P... | Banana | nucleus | 36.55 | 37.18 |
| GSMUA_Achr3P02280_001 | Banana | nucleus | 40.76 | 36.88 |
| GSMUA_Achr7P23690_001 | Banana | nucleus | 35.71 | 35.56 |
| GSMUA_Achr10P... | Banana | nucleus | 42.44 | 35.44 |
| GSMUA_Achr8P04330_001 | Banana | nucleus | 36.13 | 35.1 |
| CDY45709 | Canola | nucleus | 24.79 | 34.1 |
| GSMUA_Achr3P20280_001 | Banana | nucleus | 33.61 | 33.9 |
| GSMUA_Achr6P14760_001 | Banana | nucleus | 36.13 | 33.86 |
| CDY49686 | Canola | nucleus | 24.37 | 33.53 |
| GSMUA_Achr3P07310_001 | Banana | nucleus | 34.03 | 33.2 |
| GSMUA_Achr7P12610_001 | Banana | nucleus | 32.35 | 32.77 |
| GSMUA_Achr5P24560_001 | Banana | nucleus | 31.93 | 32.2 |
| GSMUA_Achr3P25280_001 | Banana | nucleus | 34.87 | 31.2 |
| GSMUA_Achr9P15540_001 | Banana | nucleus | 31.93 | 31.02 |
| GSMUA_Achr5P16870_001 | Banana | nucleus, plastid | 35.71 | 29.93 |
| GSMUA_Achr10P... | Banana | nucleus | 35.71 | 26.65 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSMUA_Achr7G26700_001 |
| EnsemblPlants:GSMUA_Achr7P26700_001 | EnsemblPlants:GSMUA_Achr7T26700_001 | InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 | UniProt:M0TL06 |
| InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | PFscan:PS50066 | PFscan:PS51297 |
| PANTHER:PTHR11945 | PANTHER:PTHR11945:SF274 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox | InterPro:TF_MADSbox |
| InterPro:TF_MADSbox_sf | UniParc:UPI000294EE59 | : | : | : | : |
Description
MADS-box transcription factor 1 [Source:GMGC_GENE;Acc:GSMUA_Achr7G26700_001]
Coordinates
chr7:+:27942477..27949966
Molecular Weight (calculated)
27253.3 Da
IEP (calculated)
7.406
GRAVY (calculated)
-0.646
Length
238 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGKVELKR IENKVNRQVS FAKRRNGLLK KAYELSLLCD VEVALVIFSS RGRLFEFCSS SSVLKTIERY RSCRYNVSEH TLSSNEPQMS YQEYLKLKER
101: VEYLQHSQNN LLGEDLGPLS IHDLQQLENQ IEMSLKQIRS TKMQVMFDQL CDLNHKEQAL QEANTNLRRQ LQEAGSPNLL QLSWPNGDSS AANEPPQAAG
201: FYKSQGEEPP LQTGFNLSCT APWNNEATEG YGFISRWI
101: VEYLQHSQNN LLGEDLGPLS IHDLQQLENQ IEMSLKQIRS TKMQVMFDQL CDLNHKEQAL QEANTNLRRQ LQEAGSPNLL QLSWPNGDSS AANEPPQAAG
201: FYKSQGEEPP LQTGFNLSCT APWNNEATEG YGFISRWI
001: MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEIALLIFSN RGKLYEFCSS PSGMARTVDK YRKHSYATMD PNQSAKDLQD KYQDYLKLKS
101: RVEILQHSQR HLLGEELSEM DVNELEHLER QVDASLRQIR STKARSMLDQ LSDLKTKEEM LLETNRDLRR KLEDSDAALT QSFWGSSAAE QQQQHQQQQQ
201: GMSSYQSNPP IQEAGFFKPL QGNVALQMSS HYNHNPANAT NSATTSQNVN GFFPGWMV
101: RVEILQHSQR HLLGEELSEM DVNELEHLER QVDASLRQIR STKARSMLDQ LSDLKTKEEM LLETNRDLRR KLEDSDAALT QSFWGSSAAE QQQQHQQQQQ
201: GMSSYQSNPP IQEAGFFKPL QGNVALQMSS HYNHNPANAT NSATTSQNVN GFFPGWMV
Arabidopsis Description
AGL3Agamous-like MADS-box protein AGL3 [Source:UniProtKB/Swiss-Prot;Acc:P29383]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.