Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P30120_001 | Banana | nucleus | 67.92 | 69.36 |
| GSMUA_Achr1P00750_001 | Banana | nucleus | 67.5 | 66.94 |
| GSMUA_Achr2P10250_001 | Banana | nucleus | 67.08 | 66.53 |
| KRH40560 | Soybean | nucleus | 41.67 | 64.52 |
| GSMUA_Achr1P24060_001 | Banana | nucleus | 61.25 | 60.25 |
| KRH00622 | Soybean | nucleus | 55.0 | 55.23 |
| GSMUA_Achr9P01370_001 | Banana | nucleus | 54.17 | 53.5 |
| GSMUA_Achr11P... | Banana | nucleus | 50.42 | 51.49 |
| GSMUA_Achr8P28100_001 | Banana | nucleus | 47.92 | 47.92 |
| GSMUA_Achr7P26700_001 | Banana | nucleus | 47.08 | 47.48 |
| GSMUA_Achr5P06590_001 | Banana | nucleus | 33.75 | 46.29 |
| GSMUA_Achr2P06250_001 | Banana | nucleus | 43.33 | 46.02 |
| GSMUA_Achr4P14460_001 | Banana | nucleus | 45.83 | 45.83 |
| GSMUA_Achr2P13650_001 | Banana | nucleus | 46.25 | 45.12 |
| GSMUA_Achr4P23540_001 | Banana | nucleus | 45.42 | 43.95 |
| GSMUA_Achr3P15930_001 | Banana | nucleus | 43.33 | 43.33 |
| GSMUA_Achr6P00050_001 | Banana | nucleus | 43.33 | 42.98 |
| GSMUA_Achr7P00460_001 | Banana | nucleus | 44.58 | 42.8 |
| GSMUA_Achr3P02280_001 | Banana | nucleus | 46.25 | 42.21 |
| GSMUA_Achr8P04330_001 | Banana | nucleus | 42.5 | 41.63 |
| GSMUA_Achr10P... | Banana | nucleus | 20.42 | 41.53 |
| GSMUA_Achr10P... | Banana | nucleus | 40.42 | 41.45 |
| GSMUA_Achr10P... | Banana | nucleus | 39.17 | 41.05 |
| GSMUA_Achr3P30440_001 | Banana | nucleus | 39.17 | 40.87 |
| GSMUA_Achr9P29310_001 | Banana | nucleus | 27.5 | 40.24 |
| GSMUA_Achr7P23690_001 | Banana | nucleus | 40.0 | 40.17 |
| GSMUA_Achr10P... | Banana | nucleus | 46.67 | 39.3 |
| GSMUA_Achr6P14760_001 | Banana | nucleus | 39.58 | 37.4 |
| GSMUA_Achr6P06040_001 | Banana | nucleus | 35.83 | 36.44 |
| GSMUA_Achr3P25280_001 | Banana | nucleus | 38.75 | 34.96 |
| GSMUA_Achr3P20280_001 | Banana | nucleus | 33.33 | 33.9 |
| GSMUA_Achr5P16870_001 | Banana | nucleus, plastid | 40.0 | 33.8 |
| GSMUA_Achr3P07310_001 | Banana | nucleus | 33.33 | 32.79 |
| GSMUA_Achr7P12610_001 | Banana | nucleus | 32.08 | 32.77 |
| GSMUA_Achr9P15540_001 | Banana | nucleus | 31.25 | 30.61 |
| GSMUA_Achr5P24560_001 | Banana | nucleus | 30.0 | 30.51 |
| GSMUA_Achr10P... | Banana | nucleus | 39.17 | 29.47 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSMUA_Achr2G04350_001 |
| EnsemblPlants:GSMUA_Achr2P04350_001 | EnsemblPlants:GSMUA_Achr2T04350_001 | InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 | UniProt:M0S526 |
| InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 |
| PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF146 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox |
| InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI000296B0C3 | SEG:seg | : | : |
Description
MADS-box transcription factor 6 [Source:GMGC_GENE;Acc:GSMUA_Achr2G04350_001]
Coordinates
chr2:+:9772351..9786568
Molecular Weight (calculated)
27856.2 Da
IEP (calculated)
8.206
GRAVY (calculated)
-0.770
Length
240 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEIALIIFSS RGKLFEFASS EITKTIERYQ SYQYASQLPA DDQETQARNT YQEISKLKAK
101: YESLQRSHRN LLGEDLGPLS LKELQQLERQ LESALSQARQ RRTQLMLDHM EELQKRERHL EDINRQLKFK LEAETSSLRA VQGSWEPNAM IESDPFSFRL
201: QPNTMECEPT LQMYHHFVPP EAATPGNTGG ENTYMLGWGL
101: YESLQRSHRN LLGEDLGPLS LKELQQLERQ LESALSQARQ RRTQLMLDHM EELQKRERHL EDINRQLKFK LEAETSSLRA VQGSWEPNAM IESDPFSFRL
201: QPNTMECEPT LQMYHHFVPP EAATPGNTGG ENTYMLGWGL
001: MGRGRVEMKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFGSV GIESTIERYN RCYNCSLSNN KPEETTQSWC QEVTKLKSKY
101: ESLVRTNRNL LGEDLGEMGV KELQALERQL EAALTATRQR KTQVMMEEME DLRKKERQLG DINKQLKIKF ETEGHAFKTF QDLWANSAAS VAGDPNNSEF
201: PVEPSHPNVL DCNTEPFLQI GFQQHYYVQG EGSSVSKSNV AGETNFVQGW VL
101: ESLVRTNRNL LGEDLGEMGV KELQALERQL EAALTATRQR KTQVMMEEME DLRKKERQLG DINKQLKIKF ETEGHAFKTF QDLWANSAAS VAGDPNNSEF
201: PVEPSHPNVL DCNTEPFLQI GFQQHYYVQG EGSSVSKSNV AGETNFVQGW VL
Arabidopsis Description
AGL6AGAMOUS-like protein 6 [Source:UniProtKB/TrEMBL;Acc:Q1PEU3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.