Factsheet for GSMUA_Achr11P19540_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr1P03630_001
GSMUA_Achr2P11820_001
GSMUA_Achr2P13650_001
GSMUA_Achr3P02280_001
GSMUA_Achr3P07310_001
GSMUA_Achr3P25280_001
GSMUA_Achr3P30440_001
GSMUA_Achr4P23540_001
GSMUA_Achr5P01230_001
GSMUA_Achr5P06590_001
GSMUA_Achr5P10250_001
GSMUA_Achr5P24560_001
GSMUA_Achr6P00050_001
GSMUA_Achr6P14760_001
GSMUA_Achr6P18670_001
GSMUA_Achr7P00460_001
GSMUA_Achr7P12610_001
GSMUA_Achr8P04330_001
GSMUA_Achr9P15540_001
GSMUA_Achr9P20940_001
GSMUA_Achr9P20950_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02310.1	GSMUA_Achr10P...	AT1G69120.1	15604664
AT3G02310.1	GSMUA_Achr2P13650_001	AT1G69120.1	15604664
AT3G02310.1	GSMUA_Achr3P02280_001	AT1G69120.1	15604664
AT3G02310.1	GSMUA_Achr3P25280_001	AT1G69120.1	15604664
AT3G02310.1	GSMUA_Achr3P30440_001	AT1G69120.1	15604664
AT3G02310.1	GSMUA_Achr4P23540_001	AT1G69120.1	15604664
AT3G02310.1	GSMUA_Achr6P00050_001	AT1G69120.1	15604664
AT3G02310.1	GSMUA_Achr7P00460_001	AT1G69120.1	15604664
AT3G02310.1	GSMUA_Achr8P04330_001	AT1G69120.1	15604664
AT3G02310.1	GSMUA_Achr1P03630_001	AT2G45660.1	15805477
AT3G02310.1	GSMUA_Achr2P11820_001	AT2G45660.1	15805477
AT3G02310.1	GSMUA_Achr5P10250_001	AT2G45660.1	15805477
AT3G02310.1	GSMUA_Achr9P20940_001	AT3G54340.1	15604664
AT3G02310.1	GSMUA_Achr9P20950_001	AT3G54340.1	15604664
AT3G02310.1	GSMUA_Achr3P07310_001	AT3G57230.1	15805477
AT3G02310.1	GSMUA_Achr5P24560_001	AT3G57230.1	15805477
AT3G02310.1	GSMUA_Achr7P12610_001	AT3G57230.1	15805477
AT3G02310.1	GSMUA_Achr9P15540_001	AT3G57230.1	15805477
AT3G02310.1	GSMUA_Achr10P...	AT4G18960.1	15604664
AT3G02310.1	GSMUA_Achr10P...	AT4G18960.1	15604664
AT3G02310.1	GSMUA_Achr5P06590_001	AT4G18960.1	15604664
AT3G02310.1	GSMUA_Achr6P14760_001	AT4G18960.1	15604664
AT3G02310.1	GSMUA_Achr10P...	AT4G18960.1	15805477
AT3G02310.1	GSMUA_Achr10P...	AT4G18960.1	15805477
AT3G02310.1	GSMUA_Achr5P06590_001	AT4G18960.1	15805477
AT3G02310.1	GSMUA_Achr6P14760_001	AT4G18960.1	15805477
AT3G02310.1	GSMUA_Achr10P...	AT4G18960.1	9418042
AT3G02310.1	GSMUA_Achr10P...	AT4G18960.1	9418042
AT3G02310.1	GSMUA_Achr5P06590_001	AT4G18960.1	9418042
AT3G02310.1	GSMUA_Achr6P14760_001	AT4G18960.1	9418042
AT3G02310.1	GSMUA_Achr5P01230_001	AT5G20240.1	15604664
AT3G02310.1	GSMUA_Achr6P18670_001	AT5G20240.1	15604664

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os09t0507200-01	Rice	nucleus	73.62	69.76
GSMUA_Achr9P01370_001	Banana	nucleus	71.91	69.55
EER97012	Sorghum	nucleus	71.91	69.55
TraesCS5A01G286800.1	Wheat	nucleus	73.62	68.65
TraesCS5D01G294500.1	Wheat	nucleus	73.62	68.65
HORVU5Hr1G076400.1	Barley	nucleus	73.19	68.25
Zm00001d021057_P001	Maize	nucleus	71.49	68.02
TraesCS5B01G286100.2	Wheat	nucleus	72.77	67.86
Zm00001d006094_P001	Maize	nucleus	71.91	67.33
TraesCS7B01G158600.1	Wheat	nucleus	68.94	65.85
TraesCS7D01G261600.1	Wheat	nucleus	69.36	65.73
TraesCS7A01G260600.1	Wheat	nucleus	68.94	65.32
EES15309	Sorghum	nucleus	66.81	65.15
Os08t0531700-01	Rice	nucleus	68.09	64.26
VIT_14s0083g01050.t01	Wine grape	nucleus	64.26	62.14
KRH45097	Soybean	nucleus	65.11	60.96
Zm00001d031620_P001	Maize	nucleus	65.53	60.39
GSMUA_Achr9P29310_001	Banana	nucleus	42.13	60.37
KRG93698	Soybean	nucleus	63.4	59.84
KRH18339	Soybean	nucleus	63.4	59.84
HORVU7Hr1G054220.3	Barley	nucleus	65.11	59.77
KRH01380	Soybean	nucleus	64.68	59.61
Solyc02g089200.2.1	Tomato	nucleus	61.7	58.94
Bra008674.1-P	Field mustard	nucleus	62.98	58.73
Bra006322.1-P	Field mustard	nucleus	62.13	58.4
CDY34718	Canola	nucleus	62.55	58.33
CDY57524	Canola	nucleus	61.7	58.0
Bra039170.1-P	Field mustard	nucleus	61.7	58.0
CDY43239	Canola	nucleus	61.7	58.0
Bra021470.1-P	Field mustard	nucleus	62.13	57.94
CDY26462	Canola	nucleus	62.55	57.87
AT3G02310.1	Thale cress	nucleus	60.85	57.2
CDX78653	Canola	nucleus	62.13	56.37
CDX69499	Canola	nucleus	62.98	56.06
CDX70651	Canola	nucleus	61.7	55.98
AT5G15800.2	Thale cress	nucleus	61.7	55.34
GSMUA_Achr8P28100_001	Banana	nucleus	56.17	55.0
GSMUA_Achr3P15930_001	Banana	nucleus	55.74	54.58
GSMUA_Achr2P06250_001	Banana	nucleus	51.49	53.54
GSMUA_Achr7P26700_001	Banana	nucleus	54.04	53.36
GSMUA_Achr4P14460_001	Banana	nucleus	54.47	53.33
GSMUA_Achr6P06040_001	Banana	nucleus	51.06	50.85
GSMUA_Achr1P00750_001	Banana	nucleus	52.34	50.83
GSMUA_Achr1P24060_001	Banana	nucleus	52.77	50.82
GSMUA_Achr4P30120_001	Banana	nucleus	50.64	50.64
GSMUA_Achr2P04350_001	Banana	nucleus	51.49	50.42
GSMUA_Achr2P10250_001	Banana	nucleus	49.79	48.35
GSMUA_Achr2P13650_001	Banana	nucleus	49.36	47.15
GSMUA_Achr6P00050_001	Banana	nucleus	47.23	45.87
PGSC0003DMT400004875	Potato	nucleus	36.6	45.74
GSMUA_Achr7P00460_001	Banana	nucleus	47.23	44.4
GSMUA_Achr4P23540_001	Banana	nucleus	46.38	43.95
GSMUA_Achr10P...	Banana	nucleus	21.7	43.22
GSMUA_Achr3P02280_001	Banana	nucleus	48.09	42.97
GSMUA_Achr5P06590_001	Banana	nucleus	31.91	42.86
GSMUA_Achr8P04330_001	Banana	nucleus	44.26	42.45
GSMUA_Achr3P30440_001	Banana	nucleus	41.28	42.17
GSMUA_Achr10P...	Banana	nucleus	50.64	41.75
GSMUA_Achr10P...	Banana	nucleus	39.57	39.74
GSMUA_Achr7P23690_001	Banana	nucleus	37.87	37.24
GSMUA_Achr3P25280_001	Banana	nucleus	42.13	37.22
GSMUA_Achr10P...	Banana	nucleus	36.17	37.12
GSMUA_Achr3P20280_001	Banana	nucleus	34.04	33.9
GSMUA_Achr6P14760_001	Banana	nucleus	35.74	33.07
GSMUA_Achr7P12610_001	Banana	nucleus	32.77	32.77
GSMUA_Achr9P15540_001	Banana	nucleus	34.04	32.65
GSMUA_Achr5P24560_001	Banana	nucleus	32.77	32.63
GSMUA_Achr5P16870_001	Banana	nucleus, plastid	39.15	32.39
GSMUA_Achr3P07310_001	Banana	nucleus	33.62	32.38
GSMUA_Achr10P...	Banana	nucleus	36.17	26.65

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	ncoils:Coil	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	EnsemblPlantsGene:GSMUA_Achr11G19540_001
EnsemblPlants:GSMUA_Achr11P19540_001	EnsemblPlants:GSMUA_Achr11T19540_001	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	UniProt:M0RTN4
InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066
PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF260	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0001CC913D	SEG:seg	:	:

Description

MADS-box transcription factor 8 [Source:GMGC_GENE;Acc:GSMUA_Achr11G19540_001]

Coordinates

chr11:-:20645924..20653348

Molecular Weight (calculated)

26922.2 Da

IEP (calculated)

8.916

GRAVY (calculated)

-0.725

Length

235 amino acids

Sequence
(BLAST)

001: MGRGRVELRR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVAVIVFSS RGKLYEFCSG SSMMRTLERY QKCSYGGSES TIQAKENQLV QSSRQEYLKL
101: KARLEALQRS QRNLLGEDLG SLSIKELDYL EKQLDMSLKE IRSTRTQQML DQLTDLQRRE QLLCEANKGL RRRLEESSHA NGGQLWENSA HPAAQQPHGD
201: GLFYPLECQP TPQIGYQPDQ MPGTSVSTYM PAWLE

Best Arabidopsis Sequence Match ( AT1G24260.1 )
(BLAST)

001: MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS SSMLRTLERY QKCNYGAPEP NVPSREALAE LSSQQEYLKL
101: KERYDALQRT QRNLLGEDLG PLSTKELESL ERQLDSSLKQ IRALRTQFML DQLNDLQSKE RMLTETNKTL RLRLADGYQM PLQLNPNQEE VDHYGRHHHQ
201: QQQHSQAFFQ PLECEPILQI GYQGQQDGMG AGPSVNNYML GWLPYDTNSI

Arabidopsis Description

SEP3At1g24260 [Source:UniProtKB/TrEMBL;Acc:B4F7R9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.