Factsheet for VIT_14s0083g01050.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0211g00180.t01
VIT_10s0003g02070.t01
VIT_18s0001g01760.t01
VIT_18s0001g13460.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02310.1	VIT_18s0001g13460.t01	AT3G54340.1	15604664
AT3G02310.1	VIT_10s0003g02070.t01	AT4G18960.1	15604664
AT3G02310.1	VIT_10s0003g02070.t01	AT4G18960.1	15805477
AT3G02310.1	VIT_10s0003g02070.t01	AT4G18960.1	9418042
AT3G02310.1	VIT_00s0211g00180.t01	AT4G37940.1	15805477
AT3G02310.1	VIT_18s0001g01760.t01	AT5G20240.1	15604664

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG93698	Soybean	nucleus	84.36	82.33
KRH18339	Soybean	nucleus	84.36	82.33
KRH45097	Soybean	nucleus	83.54	80.88
KRH01380	Soybean	nucleus	82.72	78.82
Bra008674.1-P	Field mustard	nucleus	78.6	75.79
CDY26462	Canola	nucleus	77.37	74.02
Bra006322.1-P	Field mustard	nucleus	75.72	73.6
VIT_17s0000g05000.t01	Wine grape	nucleus	73.66	72.76
VIT_01s0010g03900.t01	Wine grape	nucleus	65.84	72.4
VIT_01s0011g00110.t01	Wine grape	nucleus	72.02	72.02
CDX69499	Canola	nucleus	78.19	71.97
AT5G15800.2	Thale cress	nucleus	77.37	71.76
AT3G02310.1	Thale cress	nucleus	73.66	71.6
CDY43239	Canola	nucleus	73.66	71.6
PGSC0003DMT400003483	Potato	nucleus	72.43	71.54
Bra021470.1-P	Field mustard	nucleus	74.07	71.43
Solyc02g089200.2.1	Tomato	nucleus	72.02	71.14
CDX78653	Canola	nucleus	75.72	71.04
CDY34718	Canola	nucleus	73.66	71.03
Bra039170.1-P	Field mustard	nucleus	72.84	70.8
CDY57524	Canola	nucleus	72.84	70.8
CDX70651	Canola	nucleus	75.31	70.66
VIT_14s0068g01800.t01	Wine grape	nucleus	17.28	65.62
GSMUA_Achr11P...	Banana	nucleus	62.14	64.26
HORVU5Hr1G076400.1	Barley	nucleus	64.61	62.3
EER97012	Sorghum	nucleus	62.14	62.14
TraesCS5A01G286800.1	Wheat	nucleus	64.2	61.9
TraesCS5D01G294500.1	Wheat	nucleus	64.2	61.9
Os09t0507200-01	Rice	nucleus	62.96	61.69
TraesCS5B01G286100.2	Wheat	nucleus	63.79	61.51
Zm00001d006094_P001	Maize	nucleus	62.55	60.56
TraesCS7B01G158600.1	Wheat	nucleus	60.08	59.35
EES15309	Sorghum	nucleus	58.85	59.34
Zm00001d021057_P001	Maize	nucleus	60.08	59.11
Os08t0531700-01	Rice	nucleus	60.49	59.04
TraesCS7A01G260600.1	Wheat	nucleus	59.67	58.47
TraesCS7D01G261600.1	Wheat	nucleus	59.67	58.47
VIT_15s0048g01270.t01	Wine grape	nucleus	56.79	56.56
Zm00001d031620_P001	Maize	nucleus	59.26	56.47
HORVU7Hr1G054220.3	Barley	nucleus	57.61	54.69
VIT_16s0022g02330.t01	Wine grape	nucleus	51.03	49.8
VIT_01s0011g00100.t01	Wine grape	nucleus	46.09	46.47
VIT_14s0083g01030.t01	Wine grape	nucleus	46.5	45.75
VIT_17s0000g04990.t01	Wine grape	nucleus	45.68	45.68
VIT_10s0003g02070.t01	Wine grape	nucleus	38.68	41.59
VIT_18s0041g01880.t01	Wine grape	nucleus	37.45	40.81
VIT_00s0211g00180.t01	Wine grape	nucleus	33.74	36.61
VIT_18s0001g07900.t01	Wine grape	nucleus	34.57	35.0
VIT_12s0142g00360.t01	Wine grape	nucleus	39.09	34.67
VIT_17s0000g01230.t01	Wine grape	nucleus	33.33	34.47

Protein Annotations

EntrezGene:100232867	wikigene:100232867	MapMan:15.5.14	Gene3D:3.40.1810.10	ProteinID:AAM21342	ProteinID:AAM21342.1
EMBL:AF373601	ProteinID:CBI16936	ProteinID:CBI16936.3	ncoils:Coil	UniProt:D7SMN8	EMBL:FN594955
GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	EntrezGene:MADS2
wikigene:MADS2	InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350
PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF353	SMART:SM00432	SUPFAM:SSF55455
TIGR:TC51745	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI00015C8ED1	ArrayExpress:VIT_14s0083g01050
EnsemblPlantsGene:VIT_14s0083g01050	EnsemblPlants:VIT_14s0083g01050.t01	unigene:Vvi.4	RefSeq:XP_019080194.1	:	:

Description

No Description!

Coordinates

chr14:-:23363261..23379498

Molecular Weight (calculated)

27764.2 Da

IEP (calculated)

9.492

GRAVY (calculated)

-0.646

Length

243 amino acids

Sequence
(BLAST)

001: MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFST RGKLYEFCSS SSMLKTLERY QKCSYGAVEV SRPSKELESS YREYLKLKSK
101: FESLQRTQRN LLGEDLGPLN TKELEQLERQ LETSLKQVRS TKTQFMLDQL SDLQNKEQVL VESNKALTRK LDEISVKNHL QLSWESGEQS MPYGHQQAQS
201: QGFFQPLECN PTLQIGYNPA GSSQLSAPSN AQNVNGFIPG WML

Best Arabidopsis Sequence Match ( AT5G15800.1 )
(BLAST)

001: MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS SNMLKTLDRY QKCSYGSIEV NNKPAKELEN SYREYLKLKG
101: RYENLQRQQR NLLGEDLGPL NSKELEQLER QLDGSLKQVR SIKTQYMLDQ LSDLQNKEQM LLETNRALAM KLDDMIGVRS HHMGGGGGWE GGEQNVTYAH
201: HQAQSQGLYQ PLECNPTLQM GYDNPVCSEQ ITATTQAQAQ QGNGYIPGWM L

Arabidopsis Description

SEP1K-box region and MADS-box transcription factor family protein [Source:UniProtKB/TrEMBL;Acc:F4KB90]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.