Factsheet for VIT_17s0000g01230.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g019710.2.1	Tomato	nucleus	48.94	64.97
PGSC0003DMT400039313	Potato	nucleus	54.04	63.5
VIT_14s0068g01800.t01	Wine grape	nucleus	16.17	59.38
VIT_18s0041g01880.t01	Wine grape	nucleus	34.47	36.32
VIT_10s0003g02070.t01	Wine grape	nucleus	34.89	36.28
VIT_00s0211g00180.t01	Wine grape	nucleus	34.04	35.71
VIT_01s0010g03900.t01	Wine grape	nucleus	32.34	34.39
VIT_01s0011g00110.t01	Wine grape	nucleus	35.32	34.16
VIT_14s0083g01050.t01	Wine grape	nucleus	34.47	33.33
VIT_17s0000g04990.t01	Wine grape	nucleus	34.04	32.92
VIT_14s0083g01030.t01	Wine grape	nucleus	34.47	32.79
VIT_15s0048g01270.t01	Wine grape	nucleus	34.04	32.79
VIT_01s0011g00100.t01	Wine grape	nucleus	33.19	32.37
VIT_18s0001g07900.t01	Wine grape	nucleus	32.77	32.08
VIT_17s0000g05000.t01	Wine grape	nucleus	33.19	31.71
VIT_12s0142g00360.t01	Wine grape	nucleus	36.6	31.39
VIT_16s0022g02330.t01	Wine grape	nucleus	33.19	31.33
CDY65347	Canola	nucleus	17.02	25.32
CDY65346	Canola	cytosol	2.13	20.0

Protein Annotations

EntrezGene:100252657	wikigene:100252657	MapMan:15.5.14	Gene3D:3.40.1810.10	ProteinID:CBI15681	ProteinID:CBI15681.3
ncoils:Coil	UniProt:D7SH01	EMBL:FN594950	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100
InterPro:IPR002487	InterPro:IPR036879	EntrezGene:LOC100252657	wikigene:LOC100252657	InterPro:MADS_MEF2-like	PFAM:PF00319
PFAM:PF01486	PRINTS:PR00404	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF146
SMART:SM00432	SUPFAM:SSF55455	TIGR:TC62855	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf
UniParc:UPI0001BE0F19	ArrayExpress:VIT_17s0000g01230	EnsemblPlantsGene:VIT_17s0000g01230	EnsemblPlants:VIT_17s0000g01230.t01	unigene:Vvi.8468	RefSeq:XP_002283916
RefSeq:XP_002283916.1	:	:	:	:	:

Description

No Description!

Coordinates

chr17:+:878171..881093

Molecular Weight (calculated)

26796.3 Da

IEP (calculated)

10.418

GRAVY (calculated)

-0.696

Length

235 amino acids

Sequence
(BLAST)

001: MGRGKVELKR IENSTSRQVT FSKRKNGLLK KAFELSILCD AEVALLIFSP SGKAYQFASH DMDRSIARYR NEVGLMEFNN YQRSRTIEFW MSEIDNLRRT
101: IDTLEAKHKH LAGEDLSTLG MKELKQLERQ LKNGVERIRA KKRRIISEHI SLLKKRQRAL QEDNTRLQKK VKLHEANLNT RAFGAEECDA FGRAVAAVVL
201: AVHMTGPGYE KDGQMGSKSH HQTARMLADQ DGGDP

Best Arabidopsis Sequence Match ( AT2G45660.1 )
(BLAST)

001: MVRGKTQMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVSLIIFSP KGKLYEFASS NMQDTIDRYL RHTKDRVSTK PVSEENMQHL KYEAANMMKK
101: IEQLEASKRK LLGEGIGTCS IEELQQIEQQ LEKSVKCIRA RKTQVFKEQI EQLKQKEKAL AAENEKLSEK WGSHESEVWS NKNQESTGRG DEESSPSSEV
201: ETQLFIGLPC SSRK

Arabidopsis Description

SOC1SOC1 [Source:UniProtKB/TrEMBL;Acc:A0A178VZL4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.