Factsheet for VIT_18s0001g07900.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH16883	Soybean	nucleus	77.92	78.24
VIT_00s0211g00180.t01	Wine grape	nucleus	72.5	77.68
Solyc04g076700.2.1	Tomato	nucleus	41.67	75.76
PGSC0003DMT400024193	Potato	nucleus	55.42	74.3
KRH72490	Soybean	nucleus	71.25	70.37
PGSC0003DMT400005159	Potato	nucleus	50.83	57.55
Solyc12g088090.1.1	Tomato	nucleus	50.83	54.95
VIT_14s0068g01800.t01	Wine grape	nucleus	14.58	54.69
VIT_18s0041g01880.t01	Wine grape	nucleus	38.33	41.26
VIT_10s0003g02070.t01	Wine grape	nucleus	37.08	39.38
VIT_17s0000g04990.t01	Wine grape	nucleus	35.83	35.39
VIT_14s0083g01050.t01	Wine grape	nucleus	35.0	34.57
VIT_15s0048g01270.t01	Wine grape	nucleus	35.0	34.43
VIT_01s0010g03900.t01	Wine grape	nucleus	31.67	34.39
VIT_14s0083g01030.t01	Wine grape	nucleus	34.58	33.6
VIT_16s0022g02330.t01	Wine grape	nucleus	34.17	32.93
VIT_01s0011g00110.t01	Wine grape	nucleus	33.33	32.92
VIT_01s0011g00100.t01	Wine grape	nucleus	32.92	32.78
VIT_17s0000g01230.t01	Wine grape	nucleus	32.08	32.77
VIT_17s0000g05000.t01	Wine grape	nucleus	33.33	32.52
VIT_12s0142g00360.t01	Wine grape	nucleus	36.25	31.75

Protein Annotations

EntrezGene:100253898	wikigene:100253898	MapMan:15.5.14	Gene3D:3.40.1810.10	EMBL:AM464996	ProteinID:CAN68105
ProteinID:CAN68105.1	ProteinID:CBI19301	ProteinID:CBI19301.3	ncoils:Coil	UniProt:E0CNS3	EMBL:FN595227
GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0004871
GO:GO:0004872	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006810	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0045944	GO:GO:0046983
InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	EntrezGene:LOC100253898	wikigene:LOC100253898	InterPro:MADS_MEF2-like
PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297
PANTHER:PTHR11945	PANTHER:PTHR11945:SF263	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox
InterPro:TF_MADSbox_sf	UniParc:UPI0001BE16E6	ArrayExpress:VIT_18s0001g07900	EnsemblPlantsGene:VIT_18s0001g07900	EnsemblPlants:VIT_18s0001g07900.t01	RefSeq:XP_002283694
RefSeq:XP_002283694.2	:	:	:	:	:

Description

No Description!

Coordinates

chr18:+:6351250..6376057

Molecular Weight (calculated)

27734.5 Da

IEP (calculated)

9.929

GRAVY (calculated)

-0.677

Length

240 amino acids

Sequence
(BLAST)

001: MGRGKIVIRR IDNSTSRQVT FSKRRSGLLK KAKELAILCD AEVGVIIFSS TGKLYDYAST SIKSITERYI KAKEEHQQLV NPTSEVKFWQ REAAMLRQQL
101: QHLQENHRQM MGEELSGLSV KDLQNLENQL EMSLRGVRMK KDQILIDEIQ ELNQKGNLLH NENVELYKKV NLIRQENMEL YKKVYGTREV NGTNRNAFTN
201: GLSIGEDLHV PIHLQLCQPQ QQNYETTPAR ATKLGRLQLQ

Best Arabidopsis Sequence Match ( AT3G57230.4 )
(BLAST)

001: MGRGKIAIKR INNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGVIIFSS TGRLYDFSSS SMKSVIERYS DAKGETSSEN DPASEIQFWQ KEAAILKRQL
101: HNLQENHRQM MGEELSGLSV EALQNLENQL ELSLRGVRMK KDQMLIEEIQ VLNREGNLVH QENLDLHKKV NLMHQQNMEL HEKVSEVEGV KIANKNSLLT
201: NGLDMRDTSN EHVHLQLSQP QHDHETHSKA IQLNYFSFIA

Arabidopsis Description

AGL16Agamous-like MADS-box protein AGL16 [Source:UniProtKB/Swiss-Prot;Acc:A2RVQ5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.