Factsheet for VIT_15s0048g01270.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0211g00180.t01
VIT_02s0025g04650.t01
VIT_10s0003g02070.t01
VIT_17s0000g04990.t01
VIT_18s0001g07460.t01
VIT_19s0014g00310.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45650.1	VIT_19s0014g00310.t01	AT1G77980.1	15805477
AT2G45650.1	VIT_02s0025g04650.t01	AT4G11880.1	15805477
AT2G45650.1	VIT_10s0003g02070.t01	AT4G18960.1	9418042
AT2G45650.1	VIT_18s0001g07460.t01	AT4G24540.1	15805477
AT2G45650.1	VIT_00s0211g00180.t01	AT4G37940.1	15805477
AT2G45650.1	VIT_17s0000g04990.t01	AT5G60910.1	15805477
AT3G61120.1	VIT_10s0003g02070.t01	AT4G18960.1	15805477
AT3G61120.1	VIT_00s0211g00180.t01	AT4G37940.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH48304	Soybean	nucleus	78.69	78.37
CDY60686	Canola	cytosol, nucleus, plastid	21.31	77.61
KRH65193	Soybean	nucleus	77.46	77.14
Solyc01g093960.2.1	Tomato	nucleus	77.46	75.0
PGSC0003DMT400000383	Potato	nucleus	77.46	74.12
GSMUA_Achr4P30120_001	Banana	nucleus	69.67	72.34
Os02t0682200-01	Rice	nucleus	73.36	71.6
GSMUA_Achr1P00750_001	Banana	nucleus	70.9	71.49
GSMUA_Achr2P10250_001	Banana	nucleus	69.26	69.83
AT2G45650.1	Thale cress	nucleus	70.9	68.65
CDY18911	Canola	nucleus	65.57	67.51
EES07448	Sorghum	nucleus	70.49	67.45
VIT_14s0068g01800.t01	Wine grape	nucleus	17.62	67.19
CDY18912	Canola	nucleus	65.16	65.98
KXG26975	Sorghum	nucleus	63.52	65.96
HORVU0Hr1G032300.1	Barley	nucleus	72.13	65.92
HORVU6Hr1G066140.9	Barley	nucleus	72.13	65.67
Bra004927.1-P	Field mustard	nucleus	64.75	65.29
Os04t0580700-01	Rice	nucleus	67.21	64.57
TraesCS6B01G286400.1	Wheat	nucleus	68.44	64.48
CDX74754	Canola	nucleus	67.21	64.06
CDY53885	Canola	nucleus	65.98	62.65
Bra000392.1-P	Field mustard	nucleus	65.98	62.65
TraesCS6D01G240200.3	Wheat	nucleus	69.67	62.5
TraesCS6A01G259000.2	Wheat	nucleus	70.49	59.31
Zm00001d051465_P002	Maize	nucleus	70.49	58.7
VIT_01s0010g03900.t01	Wine grape	nucleus	52.87	58.37
VIT_16s0022g02330.t01	Wine grape	nucleus	59.02	57.83
VIT_14s0083g01050.t01	Wine grape	nucleus	56.56	56.79
VIT_01s0011g00110.t01	Wine grape	nucleus	54.1	54.32
VIT_17s0000g05000.t01	Wine grape	nucleus	52.46	52.03
AT3G61120.1	Thale cress	nucleus	51.64	51.64
Zm00001d017614_P003	Maize	nucleus	58.61	51.62
CDX89097	Canola	nucleus	49.59	49.19
Bra014454.1-P	Field mustard	nucleus	46.31	49.13
VIT_01s0011g00100.t01	Wine grape	nucleus	45.49	46.06
VIT_17s0000g04990.t01	Wine grape	nucleus	43.85	44.03
VIT_14s0083g01030.t01	Wine grape	nucleus	44.26	43.72
VIT_10s0003g02070.t01	Wine grape	nucleus	39.34	42.48
VIT_18s0041g01880.t01	Wine grape	nucleus	37.7	41.26
VIT_00s0211g00180.t01	Wine grape	nucleus	33.2	36.16
VIT_12s0142g00360.t01	Wine grape	nucleus	40.57	36.13
VIT_18s0001g07900.t01	Wine grape	nucleus	34.43	35.0
VIT_17s0000g01230.t01	Wine grape	nucleus	32.79	34.04
CDY42485	Canola	nucleus	50.82	32.8

Protein Annotations

EntrezGene:100232868	wikigene:100232868	MapMan:15.5.14	Gene3D:3.40.1810.10	ProteinID:AAM21343	ProteinID:AAM21343.1
EMBL:AF373602	ProteinID:CBI38823	ProteinID:CBI38823.3	ncoils:Coil	EMBL:FN596739	GO:GO:0000977
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944
GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	EntrezGene:MADS3	wikigene:MADS3
InterPro:MADS_MEF2-like	RefSeq:NP_001268111.1	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350
PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF146	UniProt:Q8LLR1	SMART:SM00432
SUPFAM:SSF55455	TIGR:TC52906	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI00000A6524
ArrayExpress:VIT_15s0048g01270	EnsemblPlantsGene:VIT_15s0048g01270	EnsemblPlants:VIT_15s0048g01270.t01	unigene:Vvi.3	:	:

Description

MADS-box protein 3 [Source:UniProtKB/TrEMBL;Acc:Q8LLR1]

Coordinates

chr15:-:15406740..15424210

Molecular Weight (calculated)

27764.2 Da

IEP (calculated)

9.307

GRAVY (calculated)

-0.721

Length

244 amino acids

Sequence
(BLAST)

001: MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFGSA GTTKTLERYQ RVCYTPQDNN MECETQSWYQ EVSKLKAKYE
101: SLQRTQRHLL GEDLGPLSVK ELQNLEKQLE GALAQARQRK TQMMIEQMED LRRKERQLGD LNKQLKLKLE AEGQSLKAIQ GSWNPSTATA GNSSFPVHPS
201: QSNPMDCEPE PILQIGYHHY VPAEGPSVSK SMAGESNFIQ GWVL

Best Arabidopsis Sequence Match ( AT2G45650.1 )
(BLAST)

001: MGRGRVEMKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFGSV GIESTIERYN RCYNCSLSNN KPEETTQSWC QEVTKLKSKY
101: ESLVRTNRNL LGEDLGEMGV KELQALERQL EAALTATRQR KTQVMMEEME DLRKKERQLG DINKQLKIKF ETEGHAFKTF QDLWANSAAS VAGDPNNSEF
201: PVEPSHPNVL DCNTEPFLQI GFQQHYYVQG EGSSVSKSNV AGETNFVQGW VL

Arabidopsis Description

AGL6AGAMOUS-like protein 6 [Source:UniProtKB/TrEMBL;Acc:Q1PEU3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.