Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89097 | Canola | nucleus | 68.44 | 67.89 |
| Bra014454.1-P | Field mustard | nucleus | 63.52 | 67.39 |
| AT2G45650.1 | Thale cress | nucleus | 54.51 | 52.78 |
| VIT_15s0048g01270.t01 | Wine grape | nucleus | 51.64 | 51.64 |
| KRH48304 | Soybean | nucleus | 50.0 | 49.8 |
| KRH65193 | Soybean | nucleus | 50.0 | 49.8 |
| Solyc01g093960.2.1 | Tomato | nucleus | 50.82 | 49.21 |
| GSMUA_Achr1P00750_001 | Banana | nucleus | 48.77 | 49.17 |
| GSMUA_Achr4P30120_001 | Banana | nucleus | 47.13 | 48.94 |
| Os02t0682200-01 | Rice | nucleus | 50.0 | 48.8 |
| PGSC0003DMT400000383 | Potato | nucleus | 50.82 | 48.63 |
| KXG26975 | Sorghum | nucleus | 46.72 | 48.51 |
| EES07448 | Sorghum | nucleus | 49.18 | 47.06 |
| HORVU0Hr1G032300.1 | Barley | nucleus | 51.23 | 46.82 |
| TraesCS6B01G286400.1 | Wheat | nucleus | 49.59 | 46.72 |
| GSMUA_Achr2P10250_001 | Banana | nucleus | 46.31 | 46.69 |
| HORVU6Hr1G066140.9 | Barley | nucleus | 51.23 | 46.64 |
| TraesCS6D01G240200.3 | Wheat | nucleus | 50.41 | 45.22 |
| Os04t0580700-01 | Rice | nucleus | 46.72 | 44.88 |
| CDY42485 | Canola | nucleus | 67.62 | 43.65 |
| TraesCS6A01G259000.2 | Wheat | nucleus | 50.41 | 42.41 |
| AT3G02310.1 | Thale cress | nucleus | 43.03 | 42.0 |
| AT1G24260.2 | Thale cress | nucleus | 42.21 | 41.04 |
| Zm00001d051465_P002 | Maize | nucleus | 49.18 | 40.96 |
| AT5G15800.2 | Thale cress | nucleus | 43.44 | 40.46 |
| AT5G60910.1 | Thale cress | nucleus | 36.48 | 36.78 |
| AT1G26310.1 | Thale cress | nucleus | 38.11 | 36.47 |
| AT2G03710.1 | Thale cress | nucleus | 38.11 | 36.05 |
| AT1G69120.1 | Thale cress | nucleus | 36.07 | 34.38 |
| AT2G14210.2 | Thale cress | nucleus | 32.79 | 34.04 |
| Zm00001d017614_P003 | Maize | nucleus | 38.52 | 33.94 |
| AT4G18960.1 | Thale cress | nucleus | 34.43 | 33.33 |
| AT3G30260.1 | Thale cress | nucleus | 34.02 | 33.33 |
| AT2G42830.2 | Thale cress | nucleus | 33.61 | 33.06 |
| AT3G57230.1 | Thale cress | nucleus | 31.56 | 32.08 |
| AT2G22630.2 | Thale cress | nucleus | 29.51 | 31.72 |
| AT4G37940.1 | Thale cress | nucleus | 29.1 | 31.14 |
| AT3G58780.4 | Thale cress | nucleus | 34.02 | 29.54 |
| AT4G09960.4 | Thale cress | nucleus | 33.61 | 24.92 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EntrezGene:825284 | ProteinID:AEE80158.1 | Symbol:AGL13 | ArrayExpress:AT3G61120 |
| EnsemblPlantsGene:AT3G61120 | RefSeq:AT3G61120 | TAIR:AT3G61120 | RefSeq:AT3G61120-TAIR-G | EnsemblPlants:AT3G61120.1 | TAIR:AT3G61120.1 |
| Unigene:At.968 | ProteinID:CAB71042.1 | ncoils:Coil | GO:GO:0000003 | GO:GO:0000977 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009555 | GO:GO:0009791 |
| GO:GO:0009908 | GO:GO:0009987 | GO:GO:0010468 | GO:GO:0045944 | GO:GO:0046983 | GO:GO:0048481 |
| InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 | InterPro:MADS_MEF2-like | RefSeq:NP_191671.1 | PFAM:PF00319 |
| PFAM:PF01486 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0001054 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007115 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020100 | PO:PO:0025022 |
| PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF146 |
| UniProt:Q38837 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf |
| EMBL:U20183 | UniParc:UPI0000125681 | SEG:seg | : | : | : |
Description
AGL13Agamous-like MADS-box protein AGL13 [Source:UniProtKB/Swiss-Prot;Acc:Q38837]
Coordinates
chr3:-:22618259..22620529
Molecular Weight (calculated)
27969.3 Da
IEP (calculated)
6.918
GRAVY (calculated)
-0.681
Length
244 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGKVEVKR IENKITRQVT FSKRKSGLLK KAYELSVLCD AEVSLIIFST GGKLYEFSNV GVGRTIERYY RCKDNLLDND TLEDTQGLRQ EVTKLKCKYE
101: SLLRTHRNLV GEDLEGMSIK ELQTLERQLE GALSATRKQK TQVMMEQMEE LRRKERELGD INNKLKLETE DHDFKGFQDL LLNPVLTAGC STDFSLQSTH
201: QNYISDCNLG YFLQIGFQQH YEQGEGSSVT KSNARSDAET NFVQ
101: SLLRTHRNLV GEDLEGMSIK ELQTLERQLE GALSATRKQK TQVMMEQMEE LRRKERELGD INNKLKLETE DHDFKGFQDL LLNPVLTAGC STDFSLQSTH
201: QNYISDCNLG YFLQIGFQQH YEQGEGSSVT KSNARSDAET NFVQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.