Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX98330 | Canola | nucleus | 82.56 | 93.55 |
| Bra007419.1-P | Field mustard | nucleus | 81.14 | 93.06 |
| Bra014552.1-P | Field mustard | nucleus | 81.49 | 92.34 |
| AT2G42830.2 | Thale cress | nucleus | 76.16 | 86.29 |
| CDY49254 | Canola | nucleus | 82.21 | 84.0 |
| CDX89005 | Canola | nucleus | 81.14 | 82.61 |
| CDY00589 | Canola | nucleus | 80.78 | 82.55 |
| Bra003356.1-P | Field mustard | nucleus | 79.72 | 82.05 |
| KRH14461 | Soybean | nucleus | 29.54 | 79.81 |
| KRG98899 | Soybean | nucleus | 60.14 | 68.7 |
| KRH46066 | Soybean | nucleus | 60.14 | 68.42 |
| CDX67765 | Canola | nucleus | 84.34 | 68.1 |
| KRH73684 | Soybean | nucleus | 59.07 | 67.48 |
| GSMUA_Achr10P... | Banana | nucleus | 50.53 | 62.01 |
| Solyc07g055920.2.1 | Tomato | nucleus | 58.36 | 61.42 |
| GSMUA_Achr5P06590_001 | Banana | nucleus | 38.08 | 61.14 |
| VIT_12s0142g00360.t01 | Wine grape | nucleus | 59.43 | 60.95 |
| AT4G18960.1 | Thale cress | nucleus | 54.09 | 60.32 |
| PGSC0003DMT400044552 | Potato | nucleus | 54.45 | 60.24 |
| GSMUA_Achr6P14760_001 | Banana | nucleus | 49.82 | 55.12 |
| Zm00001d039434_P001 | Maize | nucleus | 48.75 | 52.29 |
| EES00105 | Sorghum | nucleus | 49.82 | 52.04 |
| TraesCS1D01G262700.1 | Wheat | nucleus | 45.91 | 51.6 |
| TraesCS5B01G115100.1 | Wheat | nucleus | 46.26 | 51.59 |
| HORVU1Hr1G023620.1 | Barley | nucleus | 45.55 | 50.79 |
| HORVU3Hr1G026650.1 | Barley | nucleus | 48.75 | 50.55 |
| TraesCS5D01G118200.1 | Wheat | nucleus | 45.2 | 50.4 |
| TraesCS5A01G117500.1 | Wheat | nucleus | 45.55 | 50.39 |
| TraesCS1B01G273300.1 | Wheat | nucleus | 45.55 | 50.2 |
| Os05t0203800-02 | Rice | nucleus | 48.4 | 50.0 |
| TraesCS3A01G314300.1 | Wheat | nucleus | 48.4 | 49.82 |
| TraesCS1B01G144800.1 | Wheat | nucleus | 47.69 | 49.81 |
| Zm00001d023955_P003 | Maize | nucleus | 46.98 | 49.81 |
| Os01t0201700-02 | Rice | nucleus | 48.75 | 49.64 |
| TraesCS3D01G140200.2 | Wheat | nucleus | 48.4 | 49.63 |
| Zm00001d042591_P002 | Maize | nucleus | 47.33 | 49.63 |
| TraesCS1D01G127700.1 | Wheat | nucleus | 47.33 | 49.44 |
| TraesCS1A01G125800.1 | Wheat | nucleus | 47.33 | 49.44 |
| Os01t0886200-01 | Rice | nucleus | 46.62 | 49.43 |
| EES01878 | Sorghum | nucleus | 48.04 | 48.74 |
| EES15827 | Sorghum | nucleus | 46.62 | 48.7 |
| Os12t0207000-01 | Rice | nucleus | 46.62 | 48.52 |
| TraesCS1A01G262700.1 | Wheat | endoplasmic reticulum | 45.55 | 46.55 |
| Zm00001d041781_P001 | Maize | nucleus | 47.33 | 46.34 |
| TraesCS3B01G157500.4 | Wheat | nucleus | 50.53 | 45.81 |
| GSMUA_Achr10P... | Banana | nucleus | 50.89 | 44.83 |
| AT4G09960.4 | Thale cress | nucleus | 49.47 | 42.25 |
| HORVU1Hr1G029220.1 | Barley | nucleus | 48.04 | 41.41 |
| OQU77603 | Sorghum | nucleus | 42.35 | 40.75 |
| Zm00001d037737_P001 | Maize | nucleus | 43.42 | 39.87 |
| Zm00001d008882_P001 | Maize | nucleus | 44.48 | 37.99 |
| AT1G24260.2 | Thale cress | nucleus | 31.67 | 35.46 |
| AT2G45650.1 | Thale cress | nucleus | 31.67 | 35.32 |
| AT3G02310.1 | Thale cress | nucleus | 31.32 | 35.2 |
| AT5G15800.2 | Thale cress | nucleus | 32.03 | 34.35 |
| AT3G61120.1 | Thale cress | nucleus | 29.54 | 34.02 |
| AT3G57230.1 | Thale cress | nucleus | 28.11 | 32.92 |
| AT2G14210.2 | Thale cress | nucleus | 27.4 | 32.77 |
| AT5G60910.1 | Thale cress | nucleus | 27.76 | 32.23 |
| AT2G22630.2 | Thale cress | nucleus | 25.98 | 32.16 |
| AT4G37940.1 | Thale cress | nucleus | 25.98 | 32.02 |
| AT2G03710.1 | Thale cress | nucleus | 29.18 | 31.78 |
| AT1G26310.1 | Thale cress | nucleus | 28.11 | 30.98 |
| AT1G69120.1 | Thale cress | nucleus | 27.76 | 30.47 |
| AT3G30260.1 | Thale cress | nucleus | 26.69 | 30.12 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EntrezGene:825047 | UniProt:A0A1I9LM26 | ProteinID:ANM63634.1 | ArrayExpress:AT3G58780 |
| EnsemblPlantsGene:AT3G58780 | RefSeq:AT3G58780 | TAIR:AT3G58780 | RefSeq:AT3G58780-TAIR-G | EnsemblPlants:AT3G58780.4 | GO:GO:0000977 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 |
| GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 | InterPro:MADS_MEF2-like | RefSeq:NP_001325709.1 |
| PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 | PFscan:PS51297 |
| PANTHER:PTHR11945 | PANTHER:PTHR11945:SF150 | Symbol:SHP1 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox |
| InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI000848A615 | SEG:seg | : | : |
Description
SHP1K-box region and MADS-box transcription factor family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LM26]
Coordinates
chr3:+:21738160..21741766
Molecular Weight (calculated)
32032.2 Da
IEP (calculated)
9.499
GRAVY (calculated)
-0.618
Length
281 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEGGSSHDA ESSKKLGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL VIFSTRGRLY EYANNSVRGT IERYKKACSD AVNPPSVTEA
101: NTQYYQQEAS KLRRQIRDIQ NSNRHIVGES LGSLNFKELK NLEGRLEKGI SRVRSKKVKS TLLSLCVSVS LSIYSPLVYI VHHPFVRILQ NELLVAEIEY
201: MQKREMELQH NNMYLRAKIA EGARLNPDQQ ESSVIQGTTV YESGVSSHDQ SQHYNRNYIP VNLLEPNQQF SGQDQPPLQL V
101: NTQYYQQEAS KLRRQIRDIQ NSNRHIVGES LGSLNFKELK NLEGRLEKGI SRVRSKKVKS TLLSLCVSVS LSIYSPLVYI VHHPFVRILQ NELLVAEIEY
201: MQKREMELQH NNMYLRAKIA EGARLNPDQQ ESSVIQGTTV YESGVSSHDQ SQHYNRNYIP VNLLEPNQQF SGQDQPPLQL V
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.