Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G140200.2 | Wheat | nucleus | 84.52 | 95.62 |
| TraesCS3A01G314300.1 | Wheat | nucleus | 82.58 | 93.77 |
| HORVU3Hr1G026650.1 | Barley | nucleus | 81.94 | 93.73 |
| Os01t0201700-02 | Rice | nucleus | 68.06 | 76.45 |
| EES00105 | Sorghum | nucleus | 66.13 | 76.21 |
| Zm00001d039434_P001 | Maize | nucleus | 62.58 | 74.05 |
| TraesCS7B01G021100.1 | Wheat | nucleus | 15.48 | 72.73 |
| GSMUA_Achr10P... | Banana | nucleus | 52.26 | 70.74 |
| VIT_10s0003g02070.t01 | Wine grape | nucleus | 50.0 | 68.58 |
| KRH14461 | Soybean | nucleus | 22.9 | 68.27 |
| TraesCS7B01G020900.1 | Wheat | nucleus | 14.84 | 66.67 |
| TraesCS1B01G144800.1 | Wheat | nucleus | 56.45 | 65.06 |
| GSMUA_Achr6P14760_001 | Banana | nucleus | 51.61 | 62.99 |
| PGSC0003DMT400073134 | Potato | nucleus | 50.32 | 62.9 |
| Solyc02g071730.2.1 | Tomato | nucleus | 50.0 | 62.5 |
| CDY09267 | Canola | nucleus | 49.68 | 61.85 |
| AT4G18960.1 | Thale cress | nucleus | 49.68 | 61.11 |
| KRH21150 | Soybean | nucleus | 47.74 | 60.91 |
| Bra013364.1-P | Field mustard | nucleus | 49.35 | 60.71 |
| CDX78909 | Canola | nucleus | 49.35 | 60.71 |
| Bra012564.1-P | Field mustard | nucleus | 49.03 | 60.56 |
| CDX98597 | Canola | nucleus | 49.03 | 60.56 |
| TraesCS5B01G115100.1 | Wheat | nucleus | 47.74 | 58.73 |
| KRH42930 | Soybean | nucleus | 45.81 | 58.44 |
| KRH46066 | Soybean | nucleus | 45.81 | 57.49 |
| KRG98899 | Soybean | nucleus | 45.48 | 57.32 |
| KRH59043 | Soybean | nucleus | 44.52 | 56.79 |
| Bra004716.1-P | Field mustard | nucleus | 43.87 | 55.74 |
| CDX79857 | Canola | nucleus | 43.87 | 55.74 |
| KRH73684 | Soybean | nucleus | 44.19 | 55.69 |
| CDX98330 | Canola | nucleus | 44.19 | 55.24 |
| Bra007419.1-P | Field mustard | nucleus | 43.23 | 54.69 |
| Bra014552.1-P | Field mustard | nucleus | 43.55 | 54.44 |
| VIT_12s0142g00360.t01 | Wine grape | nucleus | 48.06 | 54.38 |
| AT2G42830.2 | Thale cress | nucleus | 42.9 | 53.63 |
| Solyc07g055920.2.1 | Tomato | nucleus | 46.13 | 53.56 |
| PGSC0003DMT400044552 | Potato | nucleus | 43.87 | 53.54 |
| GSMUA_Achr10P... | Banana | nucleus | 54.84 | 53.29 |
| Zm00001d008882_P001 | Maize | nucleus | 56.45 | 53.19 |
| TraesCS1B01G273300.1 | Wheat | nucleus | 43.23 | 52.55 |
| AT3G58780.4 | Thale cress | nucleus | 45.81 | 50.53 |
| CDX99406 | Canola | nucleus | 50.32 | 50.0 |
| CDY49254 | Canola | nucleus | 43.87 | 49.45 |
| CDX89005 | Canola | nucleus | 43.23 | 48.55 |
| CDY00589 | Canola | nucleus | 42.9 | 48.36 |
| TraesCS5B01G002500.1 | Wheat | mitochondrion, nucleus | 14.19 | 47.31 |
| Bra003356.1-P | Field mustard | nucleus | 40.32 | 45.79 |
| CDX67765 | Canola | nucleus | 44.84 | 39.94 |
| TraesCS7B01G020800.1 | Wheat | nucleus | 26.45 | 36.12 |
| TraesCS6B01G322700.2 | Wheat | nucleus | 28.06 | 36.1 |
| TraesCS4B01G245700.1 | Wheat | nucleus | 24.84 | 35.65 |
| TraesCS6B01G286400.1 | Wheat | nucleus | 29.68 | 35.52 |
| TraesCS1B01G058100.1 | Wheat | nucleus | 27.42 | 34.98 |
| TraesCS1B01G058200.1 | Wheat | nucleus | 25.16 | 34.98 |
| TraesCS7B01G009500.1 | Wheat | nucleus | 25.81 | 34.78 |
| TraesCS7B01G009800.1 | Wheat | nucleus | 25.81 | 34.78 |
| TraesCS7B01G009900.1 | Wheat | mitochondrion, nucleus | 20.97 | 34.76 |
| TraesCS2B01G344000.1 | Wheat | nucleus | 26.45 | 34.17 |
| TraesCS5B01G286100.2 | Wheat | nucleus | 27.74 | 34.13 |
| TraesCS4B01G277800.1 | Wheat | nucleus | 27.1 | 34.01 |
| TraesCS5B01G396700.1 | Wheat | nucleus | 25.81 | 33.9 |
| TraesCS7B01G158600.1 | Wheat | nucleus | 26.45 | 33.33 |
| TraesCS5B01G002400.1 | Wheat | nucleus | 24.52 | 32.76 |
| TraesCS4B01G245800.1 | Wheat | nucleus | 25.81 | 32.39 |
| TraesCS1B01G058300.1 | Wheat | nucleus | 24.19 | 31.78 |
| TraesCS5B01G396600.2 | Wheat | nucleus | 25.16 | 31.08 |
| TraesCS2B01G281000.1 | Wheat | nucleus | 27.1 | 30.66 |
| TraesCS2B01G200800.1 | Wheat | nucleus | 25.48 | 29.59 |
| TraesCS7B01G021000.1 | Wheat | nucleus | 12.9 | 21.39 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 |
| InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 |
| PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF332 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox |
| InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | TMHMM:TMhelix | EnsemblPlantsGene:TraesCS3B01G157500 | EnsemblPlants:TraesCS3B01G157500.4 | TIGR:cd00265 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr3B:+:151444385..151450960
Molecular Weight (calculated)
35220.8 Da
IEP (calculated)
8.853
GRAVY (calculated)
-0.570
Length
310 amino acids
Sequence
(BLAST)
(BLAST)
001: MFPAFHANCL SWFCRLPSSQ ADLSCGASGV TANDHQLAAP APEDSAVAGS EKMGRGRIEI KRIENTTNRQ VTFCKRRNGL LKKAYELSVL CDAEVALIVF
101: SSRGRLYEYS NNSVKATIER YKKANSDTSN SGTVAEVNAQ YYQQESSKLR QQISSLQNSN RSLVRDSVST MTLRDLKQLE GRLEKGIAKI RARKILDYVL
201: LIYFFLGLVA HLTNNAFMQN ELMYAEVEYM QKREMELHND NIYLRSKVSE NERGQQPMNM MASGSTSSEY DHMVPPYDSR NFLQANILQQ QQQQQQHYSQ
301: QLQPTALQLG
101: SSRGRLYEYS NNSVKATIER YKKANSDTSN SGTVAEVNAQ YYQQESSKLR QQISSLQNSN RSLVRDSVST MTLRDLKQLE GRLEKGIAKI RARKILDYVL
201: LIYFFLGLVA HLTNNAFMQN ELMYAEVEYM QKREMELHND NIYLRSKVSE NERGQQPMNM MASGSTSSEY DHMVPPYDSR NFLQANILQQ QQQQQQHYSQ
301: QLQPTALQLG
001: MEEGGSSHDA ESSKKLGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL VIFSTRGRLY EYANNSVRGT IERYKKACSD AVNPPSVTEA
101: NTQYYQQEAS KLRRQIRDIQ NSNRHIVGES LGSLNFKELK NLEGRLEKGI SRVRSKKVKS TLLSLCVSVS LSIYSPLVYI VHHPFVRILQ NELLVAEIEY
201: MQKREMELQH NNMYLRAKIA EGARLNPDQQ ESSVIQGTTV YESGVSSHDQ SQHYNRNYIP VNLLEPNQQF SGQDQPPLQL V
101: NTQYYQQEAS KLRRQIRDIQ NSNRHIVGES LGSLNFKELK NLEGRLEKGI SRVRSKKVKS TLLSLCVSVS LSIYSPLVYI VHHPFVRILQ NELLVAEIEY
201: MQKREMELQH NNMYLRAKIA EGARLNPDQQ ESSVIQGTTV YESGVSSHDQ SQHYNRNYIP VNLLEPNQQF SGQDQPPLQL V
Arabidopsis Description
SHP1K-box region and MADS-box transcription factor family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LM26]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.