Factsheet for Zm00001d008882_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003409_P001
Zm00001d006094_P001
Zm00001d007949_P001
Zm00001d008882_P001
Zm00001d013259_P002
Zm00001d016957_P003
Zm00001d017614_P003
Zm00001d017932_P002
Zm00001d018142_P001
Zm00001d018667_P003
Zm00001d021057_P001
Zm00001d022088_P004
Zm00001d023736_P001
Zm00001d023955_P003
Zm00001d027955_P001
Zm00001d027957_P001
Zm00001d031620_P001
Zm00001d034045_P003
Zm00001d037737_P001
Zm00001d039434_P001
Zm00001d041781_P001
Zm00001d042591_P002
Zm00001d044899_P001
Zm00001d050897_P002
Zm00001d051465_P002
Zm00001d052180_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G18960.1	Zm00001d017614_P003	AT2G45650.1	9418042
AT4G18960.1	Zm00001d051465_P002	AT2G45650.1	9418042
AT4G18960.1	Zm00001d006094_P001	AT3G02310.1	15604664
AT4G18960.1	Zm00001d021057_P001	AT3G02310.1	15604664
AT4G18960.1	Zm00001d031620_P001	AT3G02310.1	15604664
AT4G18960.1	Zm00001d006094_P001	AT3G02310.1	15805477
AT4G18960.1	Zm00001d021057_P001	AT3G02310.1	15805477
AT4G18960.1	Zm00001d031620_P001	AT3G02310.1	15805477
AT4G18960.1	Zm00001d006094_P001	AT3G02310.1	9418042
AT4G18960.1	Zm00001d021057_P001	AT3G02310.1	9418042
AT4G18960.1	Zm00001d031620_P001	AT3G02310.1	9418042
AT4G18960.1	Zm00001d003409_P001	AT3G57230.1	15805477
AT4G18960.1	Zm00001d016957_P003	AT3G57230.1	15805477
AT4G18960.1	Zm00001d017932_P002	AT3G57230.1	15805477
AT4G18960.1	Zm00001d050897_P002	AT3G57230.1	15805477
AT4G18960.1	Zm00001d017614_P003	AT3G61120.1	15805477
AT4G18960.1	Zm00001d051465_P002	AT3G61120.1	15805477
AT4G18960.1	Zm00001d008882_P001	AT4G18960.1	14555696
AT4G18960.1	Zm00001d023955_P003	AT4G18960.1	14555696
AT4G18960.1	Zm00001d037737_P001	AT4G18960.1	14555696
AT4G18960.1	Zm00001d039434_P001	AT4G18960.1	14555696
AT4G18960.1	Zm00001d041781_P001	AT4G18960.1	14555696
AT4G18960.1	Zm00001d042591_P002	AT4G18960.1	14555696
AT4G18960.1	Zm00001d018142_P001	AT4G24540.1	15805477
AT4G18960.1	Zm00001d027955_P001	AT4G24540.1	15805477
AT4G18960.1	Zm00001d027957_P001	AT4G24540.1	15805477
AT4G18960.1	Zm00001d044899_P001	AT4G24540.1	15805477
AT4G18960.1	Zm00001d052180_P001	AT4G24540.1	15805477
AT4G18960.1	Zm00001d007949_P001	AT5G60910.1	15805477
AT4G18960.1	Zm00001d013259_P002	AT5G60910.1	15805477
AT4G18960.1	Zm00001d018667_P003	AT5G60910.1	15805477
AT4G18960.1	Zm00001d022088_P004	AT5G60910.1	15805477
AT4G18960.1	Zm00001d023736_P001	AT5G60910.1	15805477
AT4G18960.1	Zm00001d034045_P003	AT5G60910.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039434_P001	Maize	nucleus	62.31	78.24
EES00105	Sorghum	nucleus	61.4	75.09
KRH14461	Soybean	nucleus	22.49	71.15
Os01t0201700-02	Rice	nucleus	58.97	70.29
GSMUA_Achr10P...	Banana	nucleus	45.59	65.5
HORVU3Hr1G026650.1	Barley	nucleus	53.5	64.94
TraesCS3D01G140200.2	Wheat	nucleus	52.89	63.5
TraesCS3A01G314300.1	Wheat	nucleus	52.28	63.0
VIT_10s0003g02070.t01	Wine grape	nucleus	41.95	61.06
Zm00001d003409_P001	Maize	nucleus	15.2	57.47
PGSC0003DMT400073134	Potato	nucleus	43.16	57.26
CDY09267	Canola	nucleus	43.16	57.03
TraesCS3B01G157500.4	Wheat	nucleus	53.19	56.45
Solyc02g071730.2.1	Tomato	nucleus	42.55	56.45
AT4G18960.1	Thale cress	nucleus	43.16	56.35
GSMUA_Achr6P14760_001	Banana	nucleus	43.47	56.3
KRH21150	Soybean	nucleus	41.34	55.97
Bra012564.1-P	Field mustard	nucleus	42.55	55.78
Bra013364.1-P	Field mustard	nucleus	42.55	55.56
CDX78909	Canola	nucleus	42.55	55.56
CDX98597	Canola	nucleus	42.25	55.38
KRH42930	Soybean	nucleus	39.21	53.09
KRH59043	Soybean	nucleus	38.3	51.85
KRH46066	Soybean	nucleus	38.6	51.42
KRH73684	Soybean	nucleus	38.3	51.22
KRG98899	Soybean	nucleus	38.3	51.22
CDX79857	Canola	nucleus	37.69	50.82
Bra004716.1-P	Field mustard	nucleus	37.69	50.82
Solyc07g055920.2.1	Tomato	nucleus	40.73	50.19
CDX98330	Canola	nucleus	37.69	50.0
Zm00001d045227_P001	Maize	nucleus	20.36	49.63
PGSC0003DMT400044552	Potato	nucleus	38.3	49.61
AT2G42830.2	Thale cress	nucleus	37.39	49.6
Bra014552.1-P	Field mustard	nucleus	37.39	49.6
Bra007419.1-P	Field mustard	nucleus	36.78	49.39
VIT_12s0142g00360.t01	Wine grape	nucleus	41.03	49.27
Zm00001d023955_P003	Maize	nucleus	38.91	48.3
GSMUA_Achr10P...	Banana	nucleus	45.59	47.02
CDX99406	Canola	nucleus	43.77	46.15
Zm00001d042591_P002	Maize	nucleus	36.78	45.15
Zm00001d037737_P001	Maize	nucleus	41.95	45.1
Zm00001d041781_P001	Maize	nucleus	39.21	44.95
CDY49254	Canola	nucleus	37.39	44.73
AT3G58780.4	Thale cress	nucleus	37.99	44.48
CDX89005	Canola	nucleus	37.08	44.2
CDY00589	Canola	nucleus	36.78	44.0
Bra003356.1-P	Field mustard	nucleus	34.04	41.03
CDX67765	Canola	nucleus	37.99	35.92
Zm00001d045231_P002	Maize	nucleus	23.4	34.22
Zm00001d016957_P003	Maize	nucleus	24.32	33.33
Zm00001d034047_P007	Maize	nucleus	23.4	32.08
Zm00001d017932_P002	Maize	nucleus	22.49	31.36
Zm00001d048082_P001	Maize	nucleus	23.4	30.56
Zm00001d028217_P001	Maize	nucleus	23.4	29.84
Zm00001d021057_P001	Maize	nucleus	22.19	29.55
Zm00001d006094_P001	Maize	nucleus	22.49	29.48
Zm00001d017614_P003	Maize	nucleus	23.71	28.16
Zm00001d018667_P003	Maize	nucleus	23.1	28.04
Zm00001d051465_P002	Maize	nucleus	24.92	27.99
Zm00001d022088_P004	Maize	nucleus	21.88	27.91
Zm00001d031620_P001	Maize	nucleus	21.58	27.84
Zm00001d013259_P002	Maize	nucleus	22.49	26.52
Zm00001d023736_P001	Maize	nucleus	19.76	25.29
Zm00001d007949_P001	Maize	nucleus	23.4	25.25
Zm00001d034045_P003	Maize	nucleus	21.58	24.4
Zm00001d050897_P002	Maize	nucleus	22.8	23.73

Protein Annotations

EntrezGene:100037764	MapMan:15.5.14	Gene3D:3.40.1810.10	UniProt:A0A1D6FGI5	ProteinID:AQK90959.1	ncoils:Coil
GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	InterPro:MADS_MEF2-like
PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297
PANTHER:PTHR11945	PANTHER:PTHR11945:SF187	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox
InterPro:TF_MADSbox_sf	UniParc:UPI000844FBB6	EnsemblPlantsGene:Zm00001d008882	EnsemblPlants:Zm00001d008882_P001	EnsemblPlants:Zm00001d008882_T001	:

Description

Zea mays MADS2AGAMOUS-like protein%3B Zea mays MADS2

Coordinates

chr8:-:23705985..23714926

Molecular Weight (calculated)

36699.7 Da

IEP (calculated)

9.990

GRAVY (calculated)

-0.748

Length

329 amino acids

Sequence
(BLAST)

001: MTEIRHQASC KHVQEGSINQ RSGKSKVQAS PSENSGPNQC SSKGQPGRRN HQTDLSCGPS SKVKEQVAAA PTGSGDRQGQ GRGKIEIKRI ENTTNRQVTF
101: CKRRNGLLKK AYELSVLCDA EVALVVFSSR GRLYEYANNS VKSTIERYKK ANSDSSNSGT VAEVNAQKLY LLTGYIHTCK LAVLPAGVLQ AATDDPQLAK
201: RKHPNLFRWS SRNIVGDSIH TMGLRDLKQM EGKLEKAIIK IRARKNELLY AEVDYMQKRE MDLQTDNMYL RSKIAESNET GQPAMHMTMG APPTSEYDHM
301: APFDSRNFLQ VSMPQHYSHQ LQPTTLQLG

Best Arabidopsis Sequence Match ( AT4G18960.1 )
(BLAST)

001: TAYQSELGGD SSPLRKSGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA LIVFSSRGRL YEYSNNSVKG TIERYKKAIS DNSNTGSVAE
101: INAQYYQQES AKLRQQIISI QNSNRQLMGE TIGSMSPKEL RNLEGRLERS ITRIRSKKNE LLFSEIDYMQ KREVDLHNDN QILRAKIAEN ERNNPSISLM
201: PGGSNYEQLM PPPQTQSQPF DSRNYFQVAA LQPNNHHYSS AGRQDQTALQ LV

Arabidopsis Description

AGK-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT4G18960]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.