Factsheet for AT2G42830.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79857	Canola	nucleus	91.94	93.44
Bra004716.1-P	Field mustard	nucleus	91.94	93.44
KRH14461	Soybean	nucleus	32.26	76.92
AT3G58780.4	Thale cress	nucleus	86.29	76.16
KRG98899	Soybean	nucleus	66.94	67.48
KRH73684	Soybean	nucleus	66.94	67.48
KRH46066	Soybean	nucleus	66.94	67.21
GSMUA_Achr10P...	Banana	nucleus	56.85	61.57
GSMUA_Achr5P06590_001	Banana	nucleus	42.74	60.57
VIT_12s0142g00360.t01	Wine grape	nucleus	66.13	59.85
Solyc07g055920.2.1	Tomato	nucleus	62.9	58.43
AT4G18960.1	Thale cress	nucleus	58.47	57.54
PGSC0003DMT400044552	Potato	nucleus	57.66	56.3
GSMUA_Achr6P14760_001	Banana	nucleus	55.65	54.33
Zm00001d039434_P001	Maize	nucleus	54.03	51.15
TraesCS5B01G115100.1	Wheat	nucleus	51.61	50.79
EES00105	Sorghum	nucleus	54.84	50.56
TraesCS1D01G262700.1	Wheat	nucleus	50.81	50.4
Os01t0201700-02	Rice	nucleus	55.65	50.0
TraesCS5D01G118200.1	Wheat	nucleus	50.81	50.0
HORVU1Hr1G023620.1	Barley	nucleus	50.81	50.0
TraesCS5A01G117500.1	Wheat	nucleus	50.81	49.61
HORVU3Hr1G026650.1	Barley	nucleus	54.03	49.45
Zm00001d023955_P003	Maize	nucleus	52.82	49.43
TraesCS1B01G273300.1	Wheat	nucleus	50.4	49.02
TraesCS3A01G314300.1	Wheat	nucleus	53.63	48.72
TraesCS3D01G140200.2	Wheat	nucleus	53.63	48.54
Zm00001d042591_P002	Maize	nucleus	52.42	48.51
Os01t0886200-01	Rice	nucleus	51.61	48.3
Os05t0203800-02	Rice	nucleus	52.82	48.16
Os12t0207000-01	Rice	nucleus	52.42	48.15
EES15827	Sorghum	nucleus	52.02	47.96
TraesCS1B01G144800.1	Wheat	nucleus	51.61	47.58
TraesCS1D01G127700.1	Wheat	nucleus	51.21	47.21
TraesCS1A01G125800.1	Wheat	nucleus	51.21	47.21
EES01878	Sorghum	nucleus	52.02	46.57
Zm00001d041781_P001	Maize	nucleus	52.82	45.64
TraesCS1A01G262700.1	Wheat	endoplasmic reticulum	50.4	45.45
GSMUA_Achr10P...	Banana	nucleus	57.26	44.51
TraesCS3B01G157500.4	Wheat	nucleus	53.63	42.9
AT4G09960.4	Thale cress	nucleus	56.05	42.25
OQU77603	Sorghum	nucleus	48.79	41.44
Zm00001d037737_P001	Maize	nucleus	50.0	40.52
HORVU1Hr1G029220.1	Barley	nucleus	51.61	39.26
Zm00001d008882_P001	Maize	nucleus	49.6	37.39
AT2G45650.1	Thale cress	nucleus	36.69	36.11
AT3G02310.1	Thale cress	nucleus	35.89	35.6
AT5G15800.2	Thale cress	nucleus	37.1	35.11
AT1G24260.2	Thale cress	nucleus	35.48	35.06
AT3G61120.1	Thale cress	nucleus	33.06	33.61
AT3G57230.1	Thale cress	nucleus	32.26	33.33
AT5G60910.1	Thale cress	nucleus	31.85	32.64
AT2G03710.1	Thale cress	nucleus	33.47	32.17
AT2G22630.2	Thale cress	nucleus	29.44	32.16
AT2G14210.2	Thale cress	nucleus	30.24	31.91
AT4G37940.1	Thale cress	nucleus	29.03	31.58
AT1G26310.1	Thale cress	nucleus	31.85	30.98
AT1G69120.1	Thale cress	nucleus	31.85	30.86
AT3G30260.1	Thale cress	nucleus	29.44	29.32

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EntrezGene:818883	ProteinID:AEC10175.1	ArrayExpress:AT2G42830	EnsemblPlantsGene:AT2G42830
RefSeq:AT2G42830	TAIR:AT2G42830	RefSeq:AT2G42830-TAIR-G	EnsemblPlants:AT2G42830.2	TAIR:AT2G42830.2	EMBL:BT029453
ncoils:Coil	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	InterPro:MADS_MEF2-like
RefSeq:NP_850377.1	PFAM:PF00319	PFAM:PF01486	PO:PO:0000037	PO:PO:0000084	PO:PO:0001078
PO:PO:0001081	PO:PO:0001185	PO:PO:0001380	PO:PO:0004507	PO:PO:0007611	PO:PO:0007616
PO:PO:0009009	PO:PO:0009010	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046
PO:PO:0009052	PO:PO:0025022	PO:PO:0025281	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066
PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF150	Symbol:SHP2	SMART:SM00432	SUPFAM:SSF55455
InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0000196E8A	SEG:seg	:

Description

SHP2K-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT2G42830]

Coordinates

chr2:+:17820255..17824013

Molecular Weight (calculated)

28385.7 Da

IEP (calculated)

9.785

GRAVY (calculated)

-0.797

Length

248 amino acids

Sequence
(BLAST)

001: MEGGASNEVA ESSKKIGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL VIFSTRGRLY EYANNSVRGT IERYKKACSD AVNPPTITEA
101: NTQYYQQEAS KLRRQIRDIQ NLNRHILGES LGSLNFKELK NLESRLEKGI SRVRSKKHEM LVAEIEYMQK RVKEIELQND NMYLRSKITE RTGLQQQESS
201: VIHQGTVYES GVTSSHQSGQ YNRNYIAVNL LEPNQNSSNQ DQPPLQLV

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.