Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY27603 | Canola | nucleus | 94.42 | 93.68 |
| CDX84935 | Canola | nucleus | 93.63 | 93.63 |
| Bra032814.1-P | Field mustard | nucleus | 94.02 | 93.28 |
| Bra030032.1-P | Field mustard | nucleus | 92.43 | 92.06 |
| CDY15724 | Canola | nucleus | 90.84 | 90.48 |
| CDY11824 | Canola | nucleus | 86.85 | 88.98 |
| KRG97386 | Soybean | nucleus | 51.0 | 88.89 |
| CDY66153 | Canola | nucleus | 86.45 | 88.57 |
| Bra010955.1-P | Field mustard | nucleus | 86.06 | 88.52 |
| CDY03905 | Canola | nucleus | 92.03 | 85.56 |
| VIT_01s0010g03900.t01 | Wine grape | nucleus | 71.31 | 81.0 |
| KRH58800 | Soybean | nucleus | 76.89 | 79.1 |
| KRH42695 | Soybean | nucleus | 76.1 | 78.28 |
| Solyc05g015750.2.1 | Tomato | nucleus | 74.5 | 77.59 |
| PGSC0003DMT400056363 | Potato | nucleus | 74.5 | 77.59 |
| KRH31527 | Soybean | nucleus | 72.91 | 75.31 |
| GSMUA_Achr9P01370_001 | Banana | nucleus | 69.72 | 72.02 |
| AT3G02310.1 | Thale cress | nucleus | 58.57 | 58.8 |
| AT5G15800.2 | Thale cress | nucleus | 60.96 | 58.4 |
| AT2G03710.1 | Thale cress | nucleus | 51.0 | 49.61 |
| AT2G45650.1 | Thale cress | nucleus | 46.61 | 46.43 |
| AT3G61120.1 | Thale cress | nucleus | 41.04 | 42.21 |
| AT5G60910.1 | Thale cress | nucleus | 37.45 | 38.84 |
| AT1G69120.1 | Thale cress | nucleus | 39.44 | 38.67 |
| AT3G30260.1 | Thale cress | nucleus | 37.85 | 38.15 |
| AT1G26310.1 | Thale cress | nucleus | 38.25 | 37.65 |
| AT2G42830.2 | Thale cress | nucleus | 35.06 | 35.48 |
| AT4G18960.1 | Thale cress | nucleus | 35.46 | 35.32 |
| AT4G37940.1 | Thale cress | nucleus | 30.28 | 33.33 |
| AT2G22630.2 | Thale cress | nucleus | 29.88 | 33.04 |
| AT2G14210.2 | Thale cress | nucleus | 30.28 | 32.34 |
| AT3G58780.4 | Thale cress | nucleus | 35.46 | 31.67 |
| AT3G57230.1 | Thale cress | nucleus | 29.88 | 31.25 |
| AT4G09960.4 | Thale cress | nucleus | 35.06 | 26.75 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | PDB:4OX0 | EntrezGene:839040 | UniProt:A0A178W378 | ProteinID:AAC00586.1 |
| ProteinID:AEE30502.1 | ProteinID:AEE30503.1 | EMBL:AF015552 | EMBL:AK118696 | ArrayExpress:AT1G24260 | EnsemblPlantsGene:AT1G24260 |
| RefSeq:AT1G24260 | TAIR:AT1G24260 | RefSeq:AT1G24260-TAIR-G | EnsemblPlants:AT1G24260.2 | TAIR:AT1G24260.2 | EMBL:AY088272 |
| Unigene:At.24086 | UniProt:B4F7R9 | EMBL:BT033157 | ncoils:Coil | GO:GO:0000003 | GO:GO:0000977 |
| GO:GO:0001708 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009653 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009987 | GO:GO:0010093 | GO:GO:0030154 |
| GO:GO:0045944 | GO:GO:0046983 | GO:GO:0048481 | GO:GO:0048833 | InterPro:IPR002100 | InterPro:IPR002487 |
| InterPro:IPR036879 | InterPro:MADS_MEF2-like | RefSeq:NP_564214.2 | RefSeq:NP_850953.1 | UniProt:O22456 | ProteinID:OAP12718.1 |
| PFAM:PF00319 | PFAM:PF01486 | PO:PO:0000037 | PO:PO:0000229 | PO:PO:0000293 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007115 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 | PFscan:PS51297 |
| PANTHER:PTHR11945 | PANTHER:PTHR11945:SF351 | Symbol:SEP3 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox |
| InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI00001256D0 | SEG:seg | : | : |
Description
SEP3At1g24260 [Source:UniProtKB/TrEMBL;Acc:B4F7R9]
Coordinates
chr1:-:8593576..8596098
Molecular Weight (calculated)
29067.7 Da
IEP (calculated)
8.295
GRAVY (calculated)
-0.746
Length
251 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS SSMLRTLERY QKCNYGAPEP NVPSREALAV ELSSQQEYLK
101: LKERYDALQR TQRNLLGEDL GPLSTKELES LERQLDSSLK QIRALRTQFM LDQLNDLQSK ERMLTETNKT LRLRLADGYQ MPLQLNPNQE EVDHYGRHHH
201: QQQQHSQAFF QPLECEPILQ IGYQGQQDGM GAGPSVNNYM LGWLPYDTNS I
101: LKERYDALQR TQRNLLGEDL GPLSTKELES LERQLDSSLK QIRALRTQFM LDQLNDLQSK ERMLTETNKT LRLRLADGYQ MPLQLNPNQE EVDHYGRHHH
201: QQQQHSQAFF QPLECEPILQ IGYQGQQDGM GAGPSVNNYM LGWLPYDTNS I
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.