Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g015750.2.1 | Tomato | nucleus | 99.17 | 99.17 |
| VIT_01s0010g03900.t01 | Wine grape | nucleus | 82.99 | 90.5 |
| KRG97386 | Soybean | nucleus | 53.94 | 90.28 |
| KRH58800 | Soybean | nucleus | 81.74 | 80.74 |
| KRH42695 | Soybean | nucleus | 81.33 | 80.33 |
| KRH31527 | Soybean | nucleus | 79.67 | 79.01 |
| GSMUA_Achr9P01370_001 | Banana | nucleus | 76.35 | 75.72 |
| AT1G24260.2 | Thale cress | nucleus | 77.59 | 74.5 |
| CDY27603 | Canola | nucleus | 75.52 | 71.94 |
| CDY11824 | Canola | nucleus | 73.03 | 71.84 |
| Bra030032.1-P | Field mustard | nucleus | 75.1 | 71.83 |
| Bra010955.1-P | Field mustard | nucleus | 72.61 | 71.72 |
| CDX84935 | Canola | nucleus | 74.69 | 71.71 |
| Bra032814.1-P | Field mustard | nucleus | 75.1 | 71.54 |
| CDY15724 | Canola | nucleus | 74.69 | 71.43 |
| CDY66153 | Canola | nucleus | 72.61 | 71.43 |
| CDY03905 | Canola | nucleus | 75.1 | 67.04 |
| PGSC0003DMT400003483 | Potato | nucleus | 63.07 | 61.79 |
| PGSC0003DMT400063315 | Potato | nucleus | 59.75 | 58.54 |
| PGSC0003DMT400072891 | Potato | nucleus | 56.85 | 56.61 |
| PGSC0003DMT400004875 | Potato | nucleus | 38.59 | 49.47 |
| PGSC0003DMT400000383 | Potato | nucleus | 51.45 | 48.63 |
| PGSC0003DMT400063313 | Potato | nucleus | 43.15 | 41.94 |
| PGSC0003DMT400003485 | Potato | nucleus | 42.32 | 41.3 |
| PGSC0003DMT400010451 | Potato | nucleus | 42.74 | 41.2 |
| PGSC0003DMT400068325 | Potato | nucleus | 39.83 | 41.03 |
| PGSC0003DMT400072888 | Potato | nucleus | 39.83 | 39.34 |
| PGSC0003DMT400013248 | Potato | nucleus | 35.68 | 37.07 |
| PGSC0003DMT400065614 | Potato | nucleus | 35.68 | 37.07 |
| PGSC0003DMT400039313 | Potato | nucleus | 30.29 | 36.5 |
| PGSC0003DMT400073134 | Potato | nucleus | 37.34 | 36.29 |
| PGSC0003DMT400044552 | Potato | nucleus | 33.2 | 31.5 |
| PGSC0003DMT400024193 | Potato | nucleus | 15.77 | 21.23 |
| PGSC0003DMT400005159 | Potato | nucleus | 18.26 | 20.75 |
Protein Annotations
| EntrezGene:102584751 | MapMan:15.5.14 | Gene3D:3.40.1810.10 | ncoils:Coil | GO:GO:0000003 | GO:GO:0000977 |
| GO:GO:0001708 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009653 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009987 | GO:GO:0010093 | GO:GO:0030154 |
| GO:GO:0045944 | GO:GO:0046983 | GO:GO:0048481 | GO:GO:0048833 | InterPro:IPR002100 | InterPro:IPR002487 |
| InterPro:IPR036879 | UniProt:M1BZC3 | InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | EnsemblPlantsGene:PGSC0003DMG400021899 |
| PGSC:PGSC0003DMG400021899 | EnsemblPlants:PGSC0003DMT400056363 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 | PFscan:PS51297 |
| PANTHER:PTHR11945 | PANTHER:PTHR11945:SF346 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox | InterPro:TF_MADSbox |
| InterPro:TF_MADSbox_sf | UniParc:UPI000295D072 | RefSeq:XP_006352168.1 | : | : | : |
Description
MADS-box protein 5 [Source:PGSC_GENE;Acc:PGSC0003DMG400021899]
Coordinates
chr5:-:14664987..14671873
Molecular Weight (calculated)
27567.9 Da
IEP (calculated)
9.089
GRAVY (calculated)
-0.765
Length
241 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS SSMLKTLERY QKCNYGAPEP NISTREALEI SSQQEYLKLK
101: GRYEALQRSQ RNLLGEDLGP LNSKELESLE RQLDMSLKQI RSTRTQLMLD QLTDHQRKEH ALNEANRTLK QRLMEGSQLN LQWQPNAQDV GYGRQTTQNQ
201: GDGFFHPLDC EPTLQIGYQN DPITVGGAGP SVNNYMAGWL P
101: GRYEALQRSQ RNLLGEDLGP LNSKELESLE RQLDMSLKQI RSTRTQLMLD QLTDHQRKEH ALNEANRTLK QRLMEGSQLN LQWQPNAQDV GYGRQTTQNQ
201: GDGFFHPLDC EPTLQIGYQN DPITVGGAGP SVNNYMAGWL P
001: MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS SSMLRTLERY QKCNYGAPEP NVPSREALAE LSSQQEYLKL
101: KERYDALQRT QRNLLGEDLG PLSTKELESL ERQLDSSLKQ IRALRTQFML DQLNDLQSKE RMLTETNKTL RLRLADGYQM PLQLNPNQEE VDHYGRHHHQ
201: QQQHSQAFFQ PLECEPILQI GYQGQQDGMG AGPSVNNYML GWLPYDTNSI
101: KERYDALQRT QRNLLGEDLG PLSTKELESL ERQLDSSLKQ IRALRTQFML DQLNDLQSKE RMLTETNKTL RLRLADGYQM PLQLNPNQEE VDHYGRHHHQ
201: QQQHSQAFFQ PLECEPILQI GYQGQQDGMG AGPSVNNYML GWLPYDTNSI
Arabidopsis Description
SEP3At1g24260 [Source:UniProtKB/TrEMBL;Acc:B4F7R9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.