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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 6
  • mitochondrion 1
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc02g089200.2.1 Tomato nucleus 99.19 99.19
VIT_14s0083g01050.t01 Wine grape nucleus 71.54 72.43
KRH18339 Soybean nucleus 70.73 69.88
KRG93698 Soybean nucleus 70.73 69.88
KRH45097 Soybean nucleus 70.33 68.92
KRH01380 Soybean nucleus 69.92 67.45
Bra008674.1-P Field mustard nucleus 65.85 64.29
Bra039170.1-P Field mustard nucleus 65.04 64.0
CDY57524 Canola nucleus 65.04 64.0
CDY43239 Canola nucleus 65.04 64.0
AT3G02310.1 Thale cress nucleus 64.63 63.6
Bra006322.1-P Field mustard nucleus 64.63 63.6
Bra021470.1-P Field mustard nucleus 65.04 63.49
CDY26462 Canola nucleus 65.45 63.39
CDY34718 Canola nucleus 64.63 63.1
PGSC0003DMT400056363 Potato nucleus 61.79 63.07
AT5G15800.2 Thale cress nucleus 66.26 62.21
CDX69499 Canola nucleus 66.26 61.74
CDX78653 Canola nucleus 64.63 61.39
CDX70651 Canola nucleus 64.63 61.39
PGSC0003DMT400063315 Potato nucleus 60.16 60.16
PGSC0003DMT400072891 Potato nucleus 56.5 57.44
PGSC0003DMT400004875 Potato nucleus 36.99 48.4
PGSC0003DMT400000383 Potato nucleus 46.75 45.1
PGSC0003DMT400063313 Potato nucleus 43.09 42.74
PGSC0003DMT400010451 Potato nucleus 42.28 41.6
PGSC0003DMT400003485 Potato nucleus 41.46 41.3
PGSC0003DMT400068325 Potato nucleus 38.21 40.17
PGSC0003DMT400072888 Potato nucleus 39.43 39.75
PGSC0003DMT400013248 Potato nucleus 35.77 37.93
PGSC0003DMT400065614 Potato nucleus 34.55 36.64
PGSC0003DMT400039313 Potato nucleus 29.67 36.5
PGSC0003DMT400073134 Potato nucleus 33.33 33.06
PGSC0003DMT400044552 Potato nucleus 33.33 32.28
PGSC0003DMT400024193 Potato nucleus 16.67 22.91
PGSC0003DMT400005159 Potato nucleus 16.26 18.87
Protein Annotations
EntrezGene:102601754MapMan:15.5.14Gene3D:3.40.1810.10GO:GO:0000977GO:GO:0003674GO:GO:0003676
GO:GO:0003677GO:GO:0003700GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0045944GO:GO:0046983InterPro:IPR002100
InterPro:IPR002487InterPro:IPR036879UniProt:M0ZLS0InterPro:MADS_MEF2-likePFAM:PF00319PFAM:PF01486
EnsemblPlantsGene:PGSC0003DMG400001377PGSC:PGSC0003DMG400001377EnsemblPlants:PGSC0003DMT400003483PRINTS:PR00404ScanProsite:PS00350PFscan:PS50066
PFscan:PS51297PANTHER:PTHR11945PANTHER:PTHR11945:SF353SMART:SM00432SUPFAM:SSF55455InterPro:TF_Kbox
InterPro:TF_MADSboxInterPro:TF_MADSbox_sfUniParc:UPI000296E55CRefSeq:XP_006338336.1SEG:seg:
Description
MADS-box protein [Source:PGSC_GENE;Acc:PGSC0003DMG400001377]
Coordinates
chr2:-:45353007..45357495
Molecular Weight (calculated)
28495.0 Da
IEP (calculated)
8.287
GRAVY (calculated)
-0.719
Length
246 amino acids
Sequence
(BLAST)
001: MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALLVFSN RGKLYEFCST NNMLKTLDRY QKCSYGTLEV NRSIKDNEQS SYREYLKLKA
101: KYESLQRYQR HLLGDELGPL TIDDLEHLEV QLDTSLKHIR STRTQMMLDQ LSDLQTKEKL WNEANKVLER KMEEIYAENN LQQTWGGGEQ SLNYGQQQHP
201: QSQGFFQPLE CNSSLQIGYD PITTSSQITA VTNAQNVNGM IPGWML
Best Arabidopsis Sequence Match ( AT5G15800.1 )
(BLAST)
001: MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS SNMLKTLDRY QKCSYGSIEV NNKPAKELEN SYREYLKLKG
101: RYENLQRQQR NLLGEDLGPL NSKELEQLER QLDGSLKQVR SIKTQYMLDQ LSDLQNKEQM LLETNRALAM KLDDMIGVRS HHMGGGGGWE GGEQNVTYAH
201: HQAQSQGLYQ PLECNPTLQM GYDNPVCSEQ ITATTQAQAQ QGNGYIPGWM L
Arabidopsis Description
SEP1K-box region and MADS-box transcription factor family protein [Source:UniProtKB/TrEMBL;Acc:F4KB90]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.