Factsheet for PGSC0003DMT400000383

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400000028
PGSC0003DMT400003073
PGSC0003DMT400010451
PGSC0003DMT400024247
PGSC0003DMT400026576
PGSC0003DMT400063313
PGSC0003DMT400072888
PGSC0003DMT400073134
PGSC0003DMT400089615

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45650.1	PGSC0003DMT400003073	AT1G31630.1	15805477
AT2G45650.1	PGSC0003DMT400089615	AT1G31630.1	15805477
AT2G45650.1	PGSC0003DMT400003073	AT1G31640.1	15805477
AT2G45650.1	PGSC0003DMT400089615	AT1G31640.1	15805477
AT2G45650.1	PGSC0003DMT400072888	AT1G69120.1	15805477
AT2G45650.1	PGSC0003DMT400000028	AT2G45660.1	15805477
AT2G45650.1	PGSC0003DMT400026576	AT2G45660.1	15805477
AT2G45650.1	PGSC0003DMT400073134	AT4G18960.1	9418042
AT2G45650.1	PGSC0003DMT400024247	AT4G24540.1	15805477
AT2G45650.1	PGSC0003DMT400010451	AT5G60910.1	15805477
AT2G45650.1	PGSC0003DMT400063313	AT5G60910.1	15805477
AT3G61120.1	PGSC0003DMT400000028	AT2G45660.1	15805477
AT3G61120.1	PGSC0003DMT400026576	AT2G45660.1	15805477
AT3G61120.1	PGSC0003DMT400073134	AT4G18960.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g093960.2.1	Tomato	nucleus	97.25	98.41
VIT_15s0048g01270.t01	Wine grape	nucleus	74.12	77.46
CDY60686	Canola	cytosol, nucleus, plastid	20.0	76.12
KRH48304	Soybean	nucleus	67.84	70.61
KRH65193	Soybean	nucleus	67.45	70.2
Os02t0682200-01	Rice	nucleus	67.84	69.2
GSMUA_Achr4P30120_001	Banana	nucleus	62.35	67.66
EES07448	Sorghum	nucleus	67.45	67.45
GSMUA_Achr1P00750_001	Banana	nucleus	63.53	66.94
HORVU0Hr1G032300.1	Barley	nucleus	69.02	65.92
GSMUA_Achr2P10250_001	Banana	nucleus	62.35	65.7
HORVU6Hr1G066140.9	Barley	nucleus	69.02	65.67
KXG26975	Sorghum	nucleus	58.43	63.4
TraesCS6B01G286400.1	Wheat	nucleus	63.92	62.93
AT2G45650.1	Thale cress	nucleus	61.57	62.3
TraesCS6D01G240200.3	Wheat	nucleus	65.1	61.03
Os04t0580700-01	Rice	nucleus	60.78	61.02
CDY18911	Canola	nucleus	56.08	60.34
CDY18912	Canola	nucleus	55.69	58.92
Bra004927.1-P	Field mustard	nucleus	55.69	58.68
CDX74754	Canola	nucleus	58.04	57.81
Zm00001d051465_P002	Maize	nucleus	65.88	57.34
TraesCS6A01G259000.2	Wheat	nucleus	65.1	57.24
CDY53885	Canola	nucleus	56.47	56.03
Bra000392.1-P	Field mustard	nucleus	56.47	56.03
PGSC0003DMT400056363	Potato	nucleus	48.63	51.45
Zm00001d017614_P003	Maize	nucleus	55.69	51.26
AT3G61120.1	Thale cress	nucleus	48.63	50.82
PGSC0003DMT400063315	Potato	nucleus	47.06	48.78
PGSC0003DMT400072891	Potato	nucleus	46.27	48.76
CDX89097	Canola	nucleus	46.67	48.37
Bra014454.1-P	Field mustard	nucleus	43.14	47.83
PGSC0003DMT400003483	Potato	nucleus	45.1	46.75
PGSC0003DMT400063313	Potato	nucleus	41.18	42.34
PGSC0003DMT400010451	Potato	nucleus	41.18	42.0
PGSC0003DMT400004875	Potato	nucleus	30.2	40.96
PGSC0003DMT400013248	Potato	nucleus	36.47	40.09
PGSC0003DMT400003485	Potato	nucleus	38.43	39.68
PGSC0003DMT400065614	Potato	nucleus	36.08	39.66
PGSC0003DMT400039313	Potato	nucleus	30.59	39.0
PGSC0003DMT400072888	Potato	nucleus	36.86	38.52
PGSC0003DMT400068325	Potato	nucleus	35.29	38.46
PGSC0003DMT400073134	Potato	nucleus	36.08	37.1
PGSC0003DMT400044552	Potato	nucleus	32.16	32.28
CDY42485	Canola	nucleus	47.84	32.28
PGSC0003DMT400024193	Potato	nucleus	17.25	24.58
PGSC0003DMT400005159	Potato	nucleus	18.82	22.64

Protein Annotations

EntrezGene:102602212	MapMan:15.5.14	Gene3D:3.40.1810.10	ncoils:Coil	GO:GO:0000977	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983
InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	UniProt:M0ZGN7	InterPro:MADS_MEF2-like	PFAM:PF00319
PFAM:PF01486	EnsemblPlantsGene:PGSC0003DMG400000136	PGSC:PGSC0003DMG400000136	EnsemblPlants:PGSC0003DMT400000383	PRINTS:PR00404	ScanProsite:PS00350
PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF146	SMART:SM00432	SUPFAM:SSF55455
InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0002948917	RefSeq:XP_006339505.1	:

Description

PMADS4 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400000136]

Coordinates

chr1:-:71421222..71426490

Molecular Weight (calculated)

28889.5 Da

IEP (calculated)

8.704

GRAVY (calculated)

-0.619

Length

255 amino acids

Sequence
(BLAST)

001: MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCE AEVALIIFSS RGKLYEFGSA GITKTLERYQ RCCLNPQDNC GERETQSWYQ EVSKLKAKFE
101: ALQRTQRHLL GEDLGALSVK ELQNLEKQLE GALAQARQRK TQIMMEQMEE LRRKERHLGD VNKQLKIKVS LELSSFEGEG QGGVRGVPFP WSCNASLDEA
201: GSSTFHVHHS QSNQMDYDLP DPVLQIGYHQ YMAADGASGS RSMAVESNII HGWGL

Best Arabidopsis Sequence Match ( AT2G45650.1 )
(BLAST)

001: MGRGRVEMKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFGSV GIESTIERYN RCYNCSLSNN KPEETTQSWC QEVTKLKSKY
101: ESLVRTNRNL LGEDLGEMGV KELQALERQL EAALTATRQR KTQVMMEEME DLRKKERQLG DINKQLKIKF ETEGHAFKTF QDLWANSAAS VAGDPNNSEF
201: PVEPSHPNVL DCNTEPFLQI GFQQHYYVQG EGSSVSKSNV AGETNFVQGW VL

Arabidopsis Description

AGL6AGAMOUS-like protein 6 [Source:UniProtKB/TrEMBL;Acc:Q1PEU3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.