Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra021470.1-P | Field mustard | nucleus | 94.8 | 94.05 |
| CDY34718 | Canola | nucleus | 94.4 | 93.65 |
| CDY43239 | Canola | nucleus | 92.8 | 92.8 |
| CDY57524 | Canola | nucleus | 91.6 | 91.6 |
| Bra039170.1-P | Field mustard | nucleus | 91.6 | 91.6 |
| AT5G15800.2 | Thale cress | nucleus | 87.2 | 83.21 |
| KRH18339 | Soybean | nucleus | 74.0 | 74.3 |
| KRG93698 | Soybean | nucleus | 74.0 | 74.3 |
| VIT_14s0083g01050.t01 | Wine grape | nucleus | 71.6 | 73.66 |
| KRH45097 | Soybean | nucleus | 73.6 | 73.31 |
| KRH01380 | Soybean | nucleus | 73.2 | 71.76 |
| Solyc02g089200.2.1 | Tomato | nucleus | 63.6 | 64.63 |
| PGSC0003DMT400003483 | Potato | nucleus | 63.6 | 64.63 |
| GSMUA_Achr11P... | Banana | nucleus | 57.2 | 60.85 |
| AT1G24260.2 | Thale cress | nucleus | 58.8 | 58.57 |
| Os09t0507200-01 | Rice | nucleus | 58.0 | 58.47 |
| EER97012 | Sorghum | nucleus | 56.4 | 58.02 |
| TraesCS5B01G286100.2 | Wheat | nucleus | 57.6 | 57.14 |
| HORVU5Hr1G076400.1 | Barley | nucleus | 57.6 | 57.14 |
| Os08t0531700-01 | Rice | nucleus | 56.8 | 57.03 |
| TraesCS5A01G286800.1 | Wheat | nucleus | 57.2 | 56.75 |
| TraesCS5D01G294500.1 | Wheat | nucleus | 57.2 | 56.75 |
| Zm00001d006094_P001 | Maize | nucleus | 56.8 | 56.57 |
| TraesCS7B01G158600.1 | Wheat | nucleus | 55.6 | 56.5 |
| TraesCS7D01G261600.1 | Wheat | nucleus | 56.0 | 56.45 |
| TraesCS7A01G260600.1 | Wheat | nucleus | 55.6 | 56.05 |
| Zm00001d021057_P001 | Maize | nucleus | 55.2 | 55.87 |
| EES15309 | Sorghum | nucleus | 52.8 | 54.77 |
| HORVU7Hr1G054220.3 | Barley | nucleus | 53.6 | 52.34 |
| Zm00001d031620_P001 | Maize | nucleus | 53.2 | 52.16 |
| AT2G03710.1 | Thale cress | nucleus | 52.0 | 50.39 |
| AT2G45650.1 | Thale cress | nucleus | 47.2 | 46.83 |
| AT3G61120.1 | Thale cress | nucleus | 42.0 | 43.03 |
| AT5G60910.1 | Thale cress | nucleus | 40.0 | 41.32 |
| AT1G26310.1 | Thale cress | nucleus | 39.2 | 38.43 |
| AT1G69120.1 | Thale cress | nucleus | 39.2 | 38.28 |
| AT2G42830.2 | Thale cress | nucleus | 35.6 | 35.89 |
| AT3G30260.1 | Thale cress | nucleus | 35.2 | 35.34 |
| AT4G18960.1 | Thale cress | nucleus | 34.8 | 34.52 |
| AT2G14210.2 | Thale cress | nucleus | 32.0 | 34.04 |
| AT3G57230.1 | Thale cress | nucleus | 31.6 | 32.92 |
| AT4G37940.1 | Thale cress | nucleus | 30.0 | 32.89 |
| AT2G22630.2 | Thale cress | nucleus | 29.6 | 32.6 |
| AT3G58780.4 | Thale cress | nucleus | 35.2 | 31.32 |
| AT4G09960.4 | Thale cress | nucleus | 34.4 | 26.14 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EntrezGene:821151 | UniProt:A0A178V680 | ProteinID:AAF02125.1 | ProteinID:AAU82010.1 |
| ProteinID:AAU82012.1 | ProteinID:AAU82013.1 | ProteinID:AAU82015.1 | ProteinID:AAU82016.1 | ProteinID:AAU82017.1 | ProteinID:AAU82018.1 |
| ProteinID:AAU82019.1 | ProteinID:AAU82020.1 | ProteinID:AAU82021.1 | ProteinID:AAU82022.1 | ProteinID:AAU82023.1 | ProteinID:AAU82025.1 |
| ProteinID:AAU82026.1 | ProteinID:AAU82027.1 | ProteinID:AAU82028.1 | ProteinID:AAU82029.1 | ProteinID:AAU82030.1 | ProteinID:AEE73791.1 |
| ArrayExpress:AT3G02310 | EnsemblPlantsGene:AT3G02310 | RefSeq:AT3G02310 | TAIR:AT3G02310 | RefSeq:AT3G02310-TAIR-G | EnsemblPlants:AT3G02310.1 |
| TAIR:AT3G02310.1 | Unigene:At.41155 | EMBL:BT020478 | ncoils:Coil | GO:GO:0000003 | GO:GO:0000977 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009791 |
| GO:GO:0009908 | GO:GO:0009987 | GO:GO:0030154 | GO:GO:0045944 | GO:GO:0046983 | GO:GO:0048481 |
| InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 | EMBL:M55552 | InterPro:MADS_MEF2-like | RefSeq:NP_186880.1 |
| ProteinID:OAP01740.1 | UniProt:P29384 | PFAM:PF00319 | PFAM:PF01486 | PO:PO:0000037 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007602 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0009001 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 | PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR00404 |
| ScanProsite:PS00350 | PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF353 | UniProt:Q5XXL4 |
| Symbol:SEP2 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf |
| UniParc:UPI00001256C7 | : | : | : | : | : |
Description
SEP2SEP2 [Source:UniProtKB/TrEMBL;Acc:A0A178V680]
Coordinates
chr3:-:464279..467151
Molecular Weight (calculated)
28579.3 Da
IEP (calculated)
8.549
GRAVY (calculated)
-0.688
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVSLIVFSN RGKLYEFCST SNMLKTLERY QKCSYGSIEV NNKPAKELEN SYREYLKLKG
101: RYENLQRQQR NLLGEDLGPL NSKELEQLER QLDGSLKQVR CIKTQYMLDQ LSDLQGKEHI LLDANRALSM KLEDMIGVRH HHIGGGWEGG DQQNIAYGHP
201: QAHSQGLYQS LECDPTLQIG YSHPVCSEQM AVTVQGQSQQ GNGYIPGWML
101: RYENLQRQQR NLLGEDLGPL NSKELEQLER QLDGSLKQVR CIKTQYMLDQ LSDLQGKEHI LLDANRALSM KLEDMIGVRH HHIGGGWEGG DQQNIAYGHP
201: QAHSQGLYQS LECDPTLQIG YSHPVCSEQM AVTVQGQSQQ GNGYIPGWML
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.