Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G118200.1 | Wheat | nucleus | 96.83 | 96.83 |
| TraesCS5A01G117500.1 | Wheat | nucleus | 96.83 | 96.06 |
| HORVU1Hr1G023620.1 | Barley | nucleus | 93.65 | 93.65 |
| Os12t0207000-01 | Rice | nucleus | 83.73 | 78.15 |
| TraesCS7B01G021100.1 | Wheat | nucleus | 19.44 | 74.24 |
| Zm00001d023955_P003 | Maize | nucleus | 73.81 | 70.19 |
| EES15827 | Sorghum | nucleus | 73.02 | 68.4 |
| TraesCS7B01G020900.1 | Wheat | nucleus | 18.65 | 68.12 |
| KRH14461 | Soybean | nucleus | 27.38 | 66.35 |
| Zm00001d041781_P001 | Maize | nucleus | 74.6 | 65.51 |
| VIT_10s0003g02070.t01 | Wine grape | nucleus | 53.97 | 60.18 |
| GSMUA_Achr10P... | Banana | nucleus | 53.97 | 59.39 |
| GSMUA_Achr6P14760_001 | Banana | nucleus | 55.95 | 55.51 |
| KRH21150 | Soybean | nucleus | 53.17 | 55.14 |
| TraesCS1B01G273300.1 | Wheat | nucleus | 55.56 | 54.9 |
| KRG98899 | Soybean | nucleus | 52.38 | 53.66 |
| KRH59043 | Soybean | nucleus | 51.59 | 53.5 |
| KRH46066 | Soybean | nucleus | 52.38 | 53.44 |
| KRH73684 | Soybean | nucleus | 51.98 | 53.25 |
| KRH42930 | Soybean | nucleus | 51.19 | 53.09 |
| PGSC0003DMT400073134 | Potato | nucleus | 51.98 | 52.82 |
| Bra014552.1-P | Field mustard | nucleus | 51.98 | 52.82 |
| CDY09267 | Canola | nucleus | 51.98 | 52.61 |
| CDX79857 | Canola | nucleus | 50.79 | 52.46 |
| Bra004716.1-P | Field mustard | nucleus | 50.79 | 52.46 |
| AT4G18960.1 | Thale cress | nucleus | 52.38 | 52.38 |
| Solyc02g071730.2.1 | Tomato | nucleus | 51.19 | 52.02 |
| CDX98330 | Canola | nucleus | 51.19 | 52.02 |
| AT2G42830.2 | Thale cress | nucleus | 50.79 | 51.61 |
| Bra007419.1-P | Field mustard | nucleus | 50.0 | 51.43 |
| TraesCS1B01G144800.1 | Wheat | nucleus | 54.76 | 51.3 |
| Bra013364.1-P | Field mustard | nucleus | 50.79 | 50.79 |
| CDX78909 | Canola | nucleus | 50.79 | 50.79 |
| CDX98597 | Canola | nucleus | 50.4 | 50.6 |
| Bra012564.1-P | Field mustard | nucleus | 50.4 | 50.6 |
| Solyc07g055920.2.1 | Tomato | nucleus | 51.98 | 49.06 |
| VIT_12s0142g00360.t01 | Wine grape | nucleus | 53.17 | 48.91 |
| PGSC0003DMT400044552 | Potato | nucleus | 48.81 | 48.43 |
| TraesCS3B01G157500.4 | Wheat | nucleus | 58.73 | 47.74 |
| CDX89005 | Canola | nucleus | 51.59 | 47.1 |
| CDY00589 | Canola | nucleus | 50.79 | 46.55 |
| AT3G58780.4 | Thale cress | nucleus | 51.59 | 46.26 |
| CDY49254 | Canola | nucleus | 50.0 | 45.82 |
| TraesCS5B01G002500.1 | Wheat | mitochondrion, nucleus | 16.67 | 45.16 |
| GSMUA_Achr10P... | Banana | nucleus | 57.14 | 45.14 |
| Bra003356.1-P | Field mustard | nucleus | 47.62 | 43.96 |
| CDX99406 | Canola | nucleus | 50.79 | 41.03 |
| TraesCS4B01G245700.1 | Wheat | nucleus | 33.33 | 38.89 |
| TraesCS7B01G020800.1 | Wheat | nucleus | 34.92 | 38.77 |
| CDX67765 | Canola | nucleus | 51.59 | 37.36 |
| TraesCS6B01G322700.2 | Wheat | nucleus | 34.92 | 36.51 |
| TraesCS7B01G009900.1 | Wheat | mitochondrion, nucleus | 26.98 | 36.36 |
| TraesCS2B01G344000.1 | Wheat | nucleus | 33.33 | 35.0 |
| TraesCS5B01G396700.1 | Wheat | nucleus | 32.54 | 34.75 |
| TraesCS4B01G277800.1 | Wheat | nucleus | 33.73 | 34.41 |
| TraesCS6B01G286400.1 | Wheat | nucleus | 35.32 | 34.36 |
| TraesCS4B01G245800.1 | Wheat | nucleus | 33.33 | 34.01 |
| TraesCS1B01G058200.1 | Wheat | nucleus | 29.76 | 33.63 |
| TraesCS1B01G058100.1 | Wheat | nucleus | 32.14 | 33.33 |
| TraesCS7B01G158600.1 | Wheat | nucleus | 32.54 | 33.33 |
| TraesCS5B01G396600.2 | Wheat | nucleus | 32.94 | 33.07 |
| TraesCS7B01G009500.1 | Wheat | nucleus | 30.16 | 33.04 |
| TraesCS5B01G286100.2 | Wheat | nucleus | 32.54 | 32.54 |
| TraesCS2B01G281000.1 | Wheat | nucleus | 35.32 | 32.48 |
| TraesCS7B01G009800.1 | Wheat | nucleus | 29.37 | 32.17 |
| TraesCS5B01G002400.1 | Wheat | nucleus | 28.17 | 30.6 |
| TraesCS1B01G058300.1 | Wheat | nucleus | 28.17 | 30.08 |
| TraesCS2B01G200800.1 | Wheat | nucleus | 31.75 | 29.96 |
| TraesCS7B01G021000.1 | Wheat | nucleus | 18.25 | 24.6 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | ncoils:Coil | GO:GO:0000003 | GO:GO:0000977 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009653 | GO:GO:0009791 | GO:GO:0009908 |
| GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | GO:GO:0048283 | GO:GO:0048481 | InterPro:IPR002100 |
| InterPro:IPR002487 | InterPro:IPR036879 | InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 |
| ScanProsite:PS00350 | PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF357 | SMART:SM00432 |
| SUPFAM:SSF55455 | InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | EnsemblPlantsGene:TraesCS5B01G115100 | EnsemblPlants:TraesCS5B01G115100.1 |
| TIGR:cd00265 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr5B:-:191029784..191036910
Molecular Weight (calculated)
28391.1 Da
IEP (calculated)
9.800
GRAVY (calculated)
-0.451
Length
252 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGRIEIKR IENTTSRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFSS RGRLYEYSNN SVKATIDRYK KAHACGSTSG VPLIEVNAQQ YYQQEAAKLR
101: HQIQMLQSTN KHLVGDSVGN LSLKELKQLE SRLEKGIAKI RARKNELLSS EINYMVKREI ELQSDNIDLR TKIAEEEQQL QQVTIARPSA ALELNPFTAL
201: DMKCFFPANL FEAAVQAHAQ ARTQAQAQAS LQLNLRYQQL APPGAGDVAH QF
101: HQIQMLQSTN KHLVGDSVGN LSLKELKQLE SRLEKGIAKI RARKNELLSS EINYMVKREI ELQSDNIDLR TKIAEEEQQL QQVTIARPSA ALELNPFTAL
201: DMKCFFPANL FEAAVQAHAQ ARTQAQAQAS LQLNLRYQQL APPGAGDVAH QF
001: MEGGASNEVA ESSKKIGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL VIFSTRGRLY EYANNSVRGT IERYKKACSD AVNPPTITEA
101: NTQYYQQEAS KLRRQIRDIQ NLNRHILGES LGSLNFKELK NLESRLEKGI SRVRSKKHEM LVAEIEYMQK REIELQNDNM YLRSKITERT GLQQQESSVI
201: HQGTVYESGV TSSHQSGQYN RNYIAVNLLE PNQNSSNQDQ PPLQLV
101: NTQYYQQEAS KLRRQIRDIQ NLNRHILGES LGSLNFKELK NLESRLEKGI SRVRSKKHEM LVAEIEYMQK REIELQNDNM YLRSKITERT GLQQQESSVI
201: HQGTVYESGV TSSHQSGQYN RNYIAVNLLE PNQNSSNQDQ PPLQLV
Arabidopsis Description
SHP2K-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT2G42830]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.