Factsheet for GSMUA_Achr10P14160_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr1P00750_001
GSMUA_Achr2P10250_001
GSMUA_Achr2P13650_001
GSMUA_Achr3P02280_001
GSMUA_Achr3P06800_001
GSMUA_Achr3P07310_001
GSMUA_Achr3P25280_001
GSMUA_Achr3P30440_001
GSMUA_Achr4P23540_001
GSMUA_Achr4P30120_001
GSMUA_Achr5P06590_001
GSMUA_Achr5P24560_001
GSMUA_Achr6P00050_001
GSMUA_Achr6P14760_001
GSMUA_Achr7P00460_001
GSMUA_Achr7P12610_001
GSMUA_Achr8P04330_001
GSMUA_Achr9P01370_001
GSMUA_Achr9P15180_001
GSMUA_Achr9P15540_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G18960.1	GSMUA_Achr9P01370_001	AT1G24260.2	9418042
AT4G18960.1	GSMUA_Achr1P00750_001	AT2G45650.1	9418042
AT4G18960.1	GSMUA_Achr2P10250_001	AT2G45650.1	9418042
AT4G18960.1	GSMUA_Achr4P30120_001	AT2G45650.1	9418042
AT4G18960.1	GSMUA_Achr11P...	AT3G02310.1	15604664
AT4G18960.1	GSMUA_Achr11P...	AT3G02310.1	15805477
AT4G18960.1	GSMUA_Achr11P...	AT3G02310.1	9418042
AT4G18960.1	GSMUA_Achr3P07310_001	AT3G57230.1	15805477
AT4G18960.1	GSMUA_Achr5P24560_001	AT3G57230.1	15805477
AT4G18960.1	GSMUA_Achr7P12610_001	AT3G57230.1	15805477
AT4G18960.1	GSMUA_Achr9P15540_001	AT3G57230.1	15805477
AT4G18960.1	GSMUA_Achr1P00750_001	AT3G61120.1	15805477
AT4G18960.1	GSMUA_Achr2P10250_001	AT3G61120.1	15805477
AT4G18960.1	GSMUA_Achr4P30120_001	AT3G61120.1	15805477
AT4G18960.1	GSMUA_Achr10P...	AT4G18960.1	14555696
AT4G18960.1	GSMUA_Achr10P...	AT4G18960.1	14555696
AT4G18960.1	GSMUA_Achr5P06590_001	AT4G18960.1	14555696
AT4G18960.1	GSMUA_Achr6P14760_001	AT4G18960.1	14555696
AT4G18960.1	GSMUA_Achr10P...	AT4G24540.1	15805477
AT4G18960.1	GSMUA_Achr3P06800_001	AT4G24540.1	15805477
AT4G18960.1	GSMUA_Achr9P15180_001	AT4G24540.1	15805477
AT4G18960.1	GSMUA_Achr10P...	AT5G60910.1	15805477
AT4G18960.1	GSMUA_Achr2P13650_001	AT5G60910.1	15805477
AT4G18960.1	GSMUA_Achr3P02280_001	AT5G60910.1	15805477
AT4G18960.1	GSMUA_Achr3P25280_001	AT5G60910.1	15805477
AT4G18960.1	GSMUA_Achr3P30440_001	AT5G60910.1	15805477
AT4G18960.1	GSMUA_Achr4P23540_001	AT5G60910.1	15805477
AT4G18960.1	GSMUA_Achr6P00050_001	AT5G60910.1	15805477
AT4G18960.1	GSMUA_Achr7P00460_001	AT5G60910.1	15805477
AT4G18960.1	GSMUA_Achr8P04330_001	AT5G60910.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P14760_001	Banana	nucleus	86.03	77.56
GSMUA_Achr5P06590_001	Banana	nucleus	56.33	73.71
KRH14461	Soybean	nucleus	31.44	69.23
VIT_10s0003g02070.t01	Wine grape	nucleus	67.25	68.14
GSMUA_Achr10P...	Banana	nucleus	65.5	64.1
PGSC0003DMT400073134	Potato	nucleus	69.0	63.71
Solyc02g071730.2.1	Tomato	nucleus	69.0	63.71
KRH21150	Soybean	nucleus	65.94	62.14
KRH42930	Soybean	nucleus	65.5	61.73
Zm00001d039434_P001	Maize	nucleus	69.43	60.69
GSMUA_Achr7P23690_001	Banana	nucleus	63.32	60.67
CDY09267	Canola	nucleus	65.94	60.64
KRH59043	Soybean	nucleus	64.19	60.49
EES00105	Sorghum	nucleus	70.74	60.22
AT4G18960.1	Thale cress	nucleus	65.94	59.92
HORVU3Hr1G026650.1	Barley	nucleus	70.74	59.78
CDX78909	Canola	nucleus	65.5	59.52
Bra013364.1-P	Field mustard	nucleus	65.5	59.52
KRH46066	Soybean	nucleus	64.19	59.51
TraesCS3D01G140200.2	Wheat	nucleus	71.18	59.49
KRG98899	Soybean	nucleus	63.76	59.35
Os01t0201700-02	Rice	nucleus	71.18	59.06
TraesCS3A01G314300.1	Wheat	nucleus	70.31	58.97
CDX98597	Canola	nucleus	64.19	58.57
Bra012564.1-P	Field mustard	nucleus	64.19	58.57
GSMUA_Achr10P...	Banana	nucleus	81.22	58.31
CDX79857	Canola	nucleus	62.01	58.2
Bra004716.1-P	Field mustard	nucleus	62.01	58.2
KRH73684	Soybean	nucleus	62.01	57.72
VIT_12s0142g00360.t01	Wine grape	nucleus	68.56	57.3
AT2G42830.2	Thale cress	nucleus	61.57	56.85
CDX98330	Canola	nucleus	61.14	56.45
Solyc07g055920.2.1	Tomato	nucleus	65.07	55.81
TraesCS1B01G144800.1	Wheat	nucleus	65.5	55.76
Bra014552.1-P	Field mustard	nucleus	60.26	55.65
Bra007419.1-P	Field mustard	nucleus	59.39	55.51
TraesCS1D01G127700.1	Wheat	nucleus	65.07	55.39
PGSC0003DMT400044552	Potato	nucleus	61.14	55.12
TraesCS1A01G125800.1	Wheat	nucleus	64.63	55.02
TraesCS5B01G115100.1	Wheat	nucleus	59.39	53.97
HORVU1Hr1G023620.1	Barley	nucleus	58.95	53.57
TraesCS5D01G118200.1	Wheat	nucleus	58.95	53.57
GSMUA_Achr5P16870_001	Banana	nucleus, plastid	66.38	53.52
GSMUA_Achr10P...	Banana	nucleus	27.51	53.39
Os05t0203800-02	Rice	nucleus	63.32	53.31
Zm00001d023955_P003	Maize	nucleus	61.14	52.83
TraesCS5A01G117500.1	Wheat	nucleus	58.52	52.76
TraesCS3B01G157500.4	Wheat	nucleus	70.74	52.26
Os12t0207000-01	Rice	nucleus	61.57	52.22
EES15827	Sorghum	nucleus	59.83	50.93
AT3G58780.4	Thale cress	nucleus	62.01	50.53
CDY49254	Canola	nucleus	60.26	50.18
CDX89005	Canola	nucleus	59.83	49.64
CDY00589	Canola	nucleus	59.39	49.45
Zm00001d041781_P001	Maize	nucleus	61.14	48.78
CDX99406	Canola	nucleus	65.94	48.4
OQU77603	Sorghum	nucleus	61.57	48.29
Bra003356.1-P	Field mustard	nucleus	55.9	46.89
HORVU1Hr1G029220.1	Barley	nucleus	65.94	46.32
Zm00001d037737_P001	Maize	nucleus	61.14	45.75
Zm00001d008882_P001	Maize	nucleus	65.5	45.59
CDX67765	Canola	nucleus	61.57	40.52
GSMUA_Achr3P07310_001	Banana	nucleus	42.36	39.75
GSMUA_Achr2P04350_001	Banana	nucleus	41.05	39.17
GSMUA_Achr3P20280_001	Banana	nucleus	39.74	38.56
GSMUA_Achr4P14460_001	Banana	nucleus	40.17	38.33
GSMUA_Achr7P12610_001	Banana	nucleus	39.3	38.3
GSMUA_Achr4P30120_001	Banana	nucleus	39.3	38.3
GSMUA_Achr9P15540_001	Banana	nucleus	40.61	37.96
GSMUA_Achr1P00750_001	Banana	nucleus	39.74	37.6
GSMUA_Achr9P01370_001	Banana	nucleus	39.74	37.45
GSMUA_Achr2P10250_001	Banana	nucleus	39.3	37.19
GSMUA_Achr5P24560_001	Banana	nucleus	37.99	36.86
GSMUA_Achr7P26700_001	Banana	nucleus	37.99	36.55
GSMUA_Achr11P...	Banana	nucleus	37.12	36.17
GSMUA_Achr1P24060_001	Banana	nucleus	38.43	36.07
GSMUA_Achr8P04330_001	Banana	nucleus	37.99	35.51
GSMUA_Achr8P28100_001	Banana	nucleus	36.68	35.0
GSMUA_Achr6P00050_001	Banana	nucleus	36.24	34.3
GSMUA_Achr2P13650_001	Banana	nucleus	36.68	34.15
GSMUA_Achr4P23540_001	Banana	nucleus	36.68	33.87
GSMUA_Achr3P15930_001	Banana	nucleus	35.37	33.75
GSMUA_Achr2P06250_001	Banana	nucleus	33.19	33.63
GSMUA_Achr3P30440_001	Banana	nucleus	33.62	33.48
GSMUA_Achr7P00460_001	Banana	nucleus	36.24	33.2
GSMUA_Achr3P02280_001	Banana	nucleus	35.37	30.8
GSMUA_Achr3P25280_001	Banana	nucleus	34.93	30.08
GSMUA_Achr10P...	Banana	nucleus	37.12	29.82
GSMUA_Achr6P06040_001	Banana	nucleus	22.71	22.03
GSMUA_Achr9P29310_001	Banana	nucleus	15.28	21.34

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	ncoils:Coil	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	EnsemblPlantsGene:GSMUA_Achr10G14160_001
EnsemblPlants:GSMUA_Achr10P14160_001	EnsemblPlants:GSMUA_Achr10T14160_001	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	UniProt:M0RI42
InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066
PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF187	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI000296A1F7	:	:	:

Description

MADS-box transcription factor 3 [Source:GMGC_GENE;Acc:GSMUA_Achr10G14160_001]

Coordinates

chr10:-:22509729..22518664

Molecular Weight (calculated)

26466.8 Da

IEP (calculated)

9.766

GRAVY (calculated)

-0.703

Length

229 amino acids

Sequence
(BLAST)

001: MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD AEVALVVFST RGRLYEYANS SVKATIERYK KACSDTTGTG SLSVVNAQHY QLESAKLRQQ
101: INNIQSTNRN LMGEALSSMS LRDLKQLENK LEKGISKIRT KKNELLHAEI EYMQKREMEL QNDNMYLRNK ITENERAQQQ INMLPSTSEY EILTPFDSRN
201: FLQVLQPSQD YSHPQRTALQ LGSIQCFCR

Best Arabidopsis Sequence Match ( AT4G18960.1 )
(BLAST)

001: TAYQSELGGD SSPLRKSGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA LIVFSSRGRL YEYSNNSVKG TIERYKKAIS DNSNTGSVAE
101: INAQYYQQES AKLRQQIISI QNSNRQLMGE TIGSMSPKEL RNLEGRLERS ITRIRSKKNE LLFSEIDYMQ KREVDLHNDN QILRAKIAEN ERNNPSISLM
201: PGGSNYEQLM PPPQTQSQPF DSRNYFQVAA LQPNNHHYSS AGRQDQTALQ LV

Arabidopsis Description

AGK-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT4G18960]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.