Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 5
- mitochondrion 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
GSMUA_Achr3P20280_001 | Banana | nucleus | 81.36 | 40.68 |
GSMUA_Achr7P12610_001 | Banana | nucleus | 73.73 | 37.02 |
GSMUA_Achr3P07310_001 | Banana | nucleus | 76.27 | 36.89 |
GSMUA_Achr5P06590_001 | Banana | nucleus | 53.39 | 36.0 |
GSMUA_Achr9P15540_001 | Banana | nucleus | 74.58 | 35.92 |
GSMUA_Achr5P24560_001 | Banana | nucleus | 70.34 | 35.17 |
KRH42047 | Soybean | nucleus | 62.71 | 30.71 |
GSMUA_Achr10P... | Banana | nucleus | 53.39 | 27.51 |
GSMUA_Achr10P... | Banana | nucleus | 50.85 | 25.64 |
GSMUA_Achr7P23690_001 | Banana | nucleus | 50.85 | 25.1 |
GSMUA_Achr6P14760_001 | Banana | nucleus | 50.85 | 23.62 |
GSMUA_Achr5P16870_001 | Banana | nucleus, plastid | 52.54 | 21.83 |
GSMUA_Achr11P... | Banana | nucleus | 43.22 | 21.7 |
GSMUA_Achr2P06250_001 | Banana | nucleus | 40.68 | 21.24 |
GSMUA_Achr4P30120_001 | Banana | nucleus | 41.53 | 20.85 |
GSMUA_Achr3P15930_001 | Banana | nucleus | 42.37 | 20.83 |
GSMUA_Achr7P26700_001 | Banana | nucleus | 41.53 | 20.59 |
GSMUA_Achr9P01370_001 | Banana | nucleus | 42.37 | 20.58 |
GSMUA_Achr2P04350_001 | Banana | nucleus | 41.53 | 20.42 |
GSMUA_Achr8P04330_001 | Banana | nucleus | 42.37 | 20.41 |
GSMUA_Achr1P00750_001 | Banana | nucleus | 41.53 | 20.25 |
GSMUA_Achr1P24060_001 | Banana | nucleus | 41.53 | 20.08 |
GSMUA_Achr3P30440_001 | Banana | nucleus | 38.98 | 20.0 |
GSMUA_Achr8P28100_001 | Banana | nucleus | 40.68 | 20.0 |
GSMUA_Achr2P10250_001 | Banana | nucleus | 40.68 | 19.83 |
GSMUA_Achr4P14460_001 | Banana | nucleus | 38.98 | 19.17 |
GSMUA_Achr10P... | Banana | nucleus | 51.69 | 19.12 |
GSMUA_Achr2P13650_001 | Banana | nucleus | 38.98 | 18.7 |
GSMUA_Achr6P00050_001 | Banana | nucleus | 38.14 | 18.59 |
GSMUA_Achr7P00460_001 | Banana | nucleus | 38.98 | 18.4 |
GSMUA_Achr4P23540_001 | Banana | nucleus | 38.14 | 18.15 |
GSMUA_Achr3P25280_001 | Banana | nucleus | 39.83 | 17.67 |
GSMUA_Achr3P02280_001 | Banana | nucleus | 38.98 | 17.49 |
GSMUA_Achr10P... | Banana | nucleus | 40.68 | 16.84 |
GSMUA_Achr6P06040_001 | Banana | nucleus | 17.8 | 8.9 |
GSMUA_Achr9P29310_001 | Banana | nucleus | 5.08 | 3.66 |
Protein Annotations
MapMan:15.5.14 | Gene3D:3.40.1810.10 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 |
GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSMUA_Achr10G30040_001 | EnsemblPlants:GSMUA_Achr10P30040_001 |
EnsemblPlants:GSMUA_Achr10T30040_001 | InterPro:IPR002100 | InterPro:IPR036879 | UniProt:M0RMM8 | InterPro:MADS_MEF2-like | PFAM:PF00319 |
PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF263 | SMART:SM00432 |
SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI000294B9AB | : | : |
Description
MADS-box transcription factor 27 [Source:GMGC_GENE;Acc:GSMUA_Achr10G30040_001]
Coordinates
chr10:-:32325464..32332815
Molecular Weight (calculated)
13641.5 Da
IEP (calculated)
10.463
GRAVY (calculated)
-0.478
Length
118 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRGKIVIQR IDNSTSRQVT FSKRRNGLMK KAKELAILCD AEVGLVVFSS TGRLYDYAST SMKSVIERYK KANEEHQLVL NATSEVKFWQ MEVASLRQQL
101: HNLQENHRYA HFALHTSK
101: HNLQENHRYA HFALHTSK
001: MGRGKIAIKR INNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGVIIFSS TGRLYDFSSS SMKSVIERYS DAKGETSSEN DPASEIQFWQ KEAAILKRQL
101: HNLQENHRQM MGEELSGLSV EALQNLENQL ELSLRGVRMK KVLML
101: HNLQENHRQM MGEELSGLSV EALQNLENQL ELSLRGVRMK KVLML
Arabidopsis Description
AGL16Agamous-like MADS-box protein AGL16 [Source:UniProtKB/Swiss-Prot;Acc:A2RVQ5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.