Factsheet for GSMUA_Achr5P24560_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P00750_001
GSMUA_Achr1P03630_001
GSMUA_Achr2P10250_001
GSMUA_Achr2P11820_001
GSMUA_Achr2P13650_001
GSMUA_Achr3P02280_001
GSMUA_Achr3P06800_001
GSMUA_Achr3P07310_001
GSMUA_Achr3P25280_001
GSMUA_Achr3P30440_001
GSMUA_Achr4P23540_001
GSMUA_Achr4P30120_001
GSMUA_Achr5P06590_001
GSMUA_Achr5P10250_001
GSMUA_Achr5P24560_001
GSMUA_Achr6P00050_001
GSMUA_Achr6P14760_001
GSMUA_Achr7P00460_001
GSMUA_Achr7P02960_001
GSMUA_Achr7P12610_001
GSMUA_Achr8P04330_001
GSMUA_Achr9P15180_001
GSMUA_Achr9P15540_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G57230.1	GSMUA_Achr10P...	AT1G69120.1	15805477
AT3G57230.1	GSMUA_Achr2P13650_001	AT1G69120.1	15805477
AT3G57230.1	GSMUA_Achr3P02280_001	AT1G69120.1	15805477
AT3G57230.1	GSMUA_Achr3P25280_001	AT1G69120.1	15805477
AT3G57230.1	GSMUA_Achr3P30440_001	AT1G69120.1	15805477
AT3G57230.1	GSMUA_Achr4P23540_001	AT1G69120.1	15805477
AT3G57230.1	GSMUA_Achr6P00050_001	AT1G69120.1	15805477
AT3G57230.1	GSMUA_Achr7P00460_001	AT1G69120.1	15805477
AT3G57230.1	GSMUA_Achr8P04330_001	AT1G69120.1	15805477
AT3G57230.1	GSMUA_Achr11P...	AT1G71692.1	15805477
AT3G57230.1	GSMUA_Achr7P02960_001	AT1G71692.1	15805477
AT3G57230.1	GSMUA_Achr1P00750_001	AT2G45650.1	15805477
AT3G57230.1	GSMUA_Achr2P10250_001	AT2G45650.1	15805477
AT3G57230.1	GSMUA_Achr4P30120_001	AT2G45650.1	15805477
AT3G57230.1	GSMUA_Achr1P03630_001	AT2G45660.1	15805477
AT3G57230.1	GSMUA_Achr2P11820_001	AT2G45660.1	15805477
AT3G57230.1	GSMUA_Achr5P10250_001	AT2G45660.1	15805477
AT3G57230.1	GSMUA_Achr11P...	AT3G02310.1	15805477
AT3G57230.1	GSMUA_Achr3P07310_001	AT3G57230.1	15805477
AT3G57230.1	GSMUA_Achr5P24560_001	AT3G57230.1	15805477
AT3G57230.1	GSMUA_Achr7P12610_001	AT3G57230.1	15805477
AT3G57230.1	GSMUA_Achr9P15540_001	AT3G57230.1	15805477
AT3G57230.1	GSMUA_Achr10P...	AT4G18960.1	15805477
AT3G57230.1	GSMUA_Achr10P...	AT4G18960.1	15805477
AT3G57230.1	GSMUA_Achr5P06590_001	AT4G18960.1	15805477
AT3G57230.1	GSMUA_Achr6P14760_001	AT4G18960.1	15805477
AT3G57230.1	GSMUA_Achr10P...	AT4G24540.1	15805477
AT3G57230.1	GSMUA_Achr3P06800_001	AT4G24540.1	15805477
AT3G57230.1	GSMUA_Achr9P15180_001	AT4G24540.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d003409_P001	Maize	nucleus	27.12	73.56
GSMUA_Achr7P12610_001	Banana	nucleus	72.88	73.19
GSMUA_Achr10P...	Banana	nucleus	35.17	70.34
Os08t0431900-00	Rice	nucleus	43.22	64.15
GSMUA_Achr3P07310_001	Banana	nucleus	64.83	62.7
TraesCS2D01G325000.1	Wheat	nucleus	63.14	62.08
TraesCS2B01G344000.1	Wheat	nucleus	62.71	61.67
TraesCS2A01G337900.1	Wheat	nucleus	62.71	61.67
OQU81712	Sorghum	nucleus	61.86	61.09
TraesCS7D01G107200.1	Wheat	nucleus	25.0	60.82
Os02t0579600-00	Rice	nucleus	61.44	60.42
OQU85202	Sorghum	nucleus	61.02	60.0
GSMUA_Achr9P15540_001	Banana	nucleus	61.86	59.59
Zm00001d016957_P003	Maize	nucleus	60.17	59.17
GSMUA_Achr3P20280_001	Banana	nucleus	58.9	58.9
TraesCSU01G209900.1	Wheat	nucleus	24.15	58.76
OQU80503	Sorghum	nucleus	56.78	58.52
Os02t0731200-01	Rice	nucleus	59.75	58.51
TraesCS6B01G322700.2	Wheat	nucleus	59.75	58.51
HORVU6Hr1G073040.2	Barley	nucleus	59.32	58.09
TraesCS6A01G292300.2	Wheat	nucleus	59.32	58.09
TraesCS6D01G273500.2	Wheat	nucleus	58.9	57.68
AT3G57230.1	Thale cress	nucleus	58.47	57.5
CDX72465	Canola	nucleus	58.47	57.5
Os06t0347700-00	Rice	nucleus	35.59	57.14
Bra017638.1-P	Field mustard	nucleus	58.05	57.08
CDY49287	Canola	nucleus	58.05	57.08
OQU85464	Sorghum	nucleus	58.47	57.02
CDX75412	Canola	nucleus	56.36	55.42
Zm00001d017932_P002	Maize	nucleus	55.08	55.08
CDX69036	Canola	nucleus	55.93	55.0
Os04t0304400-01	Rice	nucleus	50.85	52.86
TraesCS1A01G045000.1	Wheat	nucleus	44.07	52.53
HORVU5Hr1G000370.3	Barley	nucleus	44.92	51.21
TraesCS7B01G009500.1	Wheat	nucleus	49.15	50.43
TraesCS7D01G106600.1	Wheat	nucleus	48.73	50.0
TraesCS7D01G106900.1	Wheat	nucleus	48.31	49.57
TraesCS7B01G009800.1	Wheat	nucleus	47.88	49.13
TraesCS7A01G111900.1	Wheat	nucleus	47.88	49.13
TraesCS1D01G045700.1	Wheat	nucleus	48.73	48.73
TraesCS7A01G111800.1	Wheat	nucleus	47.46	48.7
HORVU2Hr1G080490.1	Barley	nucleus, plastid	63.14	48.69
TraesCS7A01G111700.1	Wheat	nucleus	48.73	48.32
HORVU7Hr1G023940.2	Barley	nucleus	47.03	48.26
TraesCS5D01G002200.2	Wheat	nucleus	47.46	48.07
TraesCS1B01G058300.1	Wheat	nucleus	47.88	47.88
TraesCS5B01G002400.1	Wheat	nucleus	47.03	47.84
TraesCS1A01G044900.1	Wheat	nucleus	48.31	46.91
TraesCS1D01G045500.1	Wheat	nucleus	48.31	46.91
TraesCS1B01G058100.1	Wheat	nucleus	47.46	46.09
KRH42047	Soybean	nucleus	47.03	46.06
TraesCS1B01G058200.1	Wheat	nucleus	42.37	44.84
TraesCS1D01G045600.1	Wheat	nucleus	44.07	44.44
Bra011509.1-P	Field mustard	nucleus	53.39	43.45
Zm00001d050897_P002	Maize	nucleus	56.36	42.09
HORVU1Hr1G008290.4	Barley	nucleus	42.8	42.08
GSMUA_Achr5P06590_001	Banana	nucleus	30.08	40.57
Solyc01g106170.2.1	Tomato	mitochondrion	25.0	39.86
HORVU1Hr1G008300.3	Barley	nucleus	47.88	39.79
HORVU7Hr1G024000.2	Barley	nucleus	44.49	39.33
GSMUA_Achr10P...	Banana	nucleus	36.86	37.99
GSMUA_Achr10P...	Banana	nucleus	33.9	34.19
GSMUA_Achr7P23690_001	Banana	nucleus	34.32	33.89
GSMUA_Achr6P14760_001	Banana	nucleus	36.02	33.46
GSMUA_Achr1P00750_001	Banana	nucleus	33.9	33.06
GSMUA_Achr11P...	Banana	nucleus	32.63	32.77
GSMUA_Achr4P23540_001	Banana	nucleus	33.9	32.26
GSMUA_Achr7P00460_001	Banana	nucleus	33.9	32.0
GSMUA_Achr7P26700_001	Banana	nucleus	32.2	31.93
GSMUA_Achr8P04330_001	Banana	nucleus	33.05	31.84
GSMUA_Achr3P02280_001	Banana	nucleus	35.17	31.56
GSMUA_Achr8P28100_001	Banana	nucleus	31.78	31.25
GSMUA_Achr3P15930_001	Banana	nucleus	31.78	31.25
GSMUA_Achr6P00050_001	Banana	nucleus	31.78	30.99
GSMUA_Achr9P01370_001	Banana	nucleus	31.78	30.86
GSMUA_Achr4P14460_001	Banana	nucleus	31.36	30.83
GSMUA_Achr4P30120_001	Banana	nucleus	30.51	30.64
GSMUA_Achr2P10250_001	Banana	nucleus	31.36	30.58
GSMUA_Achr2P13650_001	Banana	nucleus	31.78	30.49
GSMUA_Achr2P06250_001	Banana	nucleus	28.81	30.09
GSMUA_Achr3P30440_001	Banana	nucleus	29.24	30.0
GSMUA_Achr2P04350_001	Banana	nucleus	30.51	30.0
GSMUA_Achr1P24060_001	Banana	nucleus	30.93	29.92
GSMUA_Achr10P...	Banana	nucleus	35.17	29.12
GSMUA_Achr3P25280_001	Banana	nucleus	32.63	28.95
GSMUA_Achr5P16870_001	Banana	nucleus, plastid	34.75	28.87
GSMUA_Achr10P...	Banana	nucleus	35.59	26.33
GSMUA_Achr9P29310_001	Banana	nucleus	14.83	21.34
GSMUA_Achr6P06040_001	Banana	nucleus	21.19	21.19

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	ncoils:Coil	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	EnsemblPlantsGene:GSMUA_Achr5G24560_001
EnsemblPlants:GSMUA_Achr5P24560_001	EnsemblPlants:GSMUA_Achr5T24560_001	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	UniProt:M0T1D1
InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066
PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF263	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI000296795B	SEG:seg	:	:

Description

MADS-box transcription factor 27 [Source:GMGC_GENE;Acc:GSMUA_Achr5G24560_001]

Coordinates

chr5:-:25867283..25879517

Molecular Weight (calculated)

27209.8 Da

IEP (calculated)

9.825

GRAVY (calculated)

-0.724

Length

236 amino acids

Sequence
(BLAST)

001: MGRGKIAIRR IDNSTSRQVT FSKRRKGLLK KAKELAILCD AEVGVVVFSA TGRVYDYAST SMKSVMERYT RAKGEHHLVM NPSSETMFWQ REATSLRQRL
101: HKLHETHRQL MGELSGLDIK DLQNIENQLE TNLDGIRKRK EQLLLEEIQE LHRKGSLVHQ ENMELYRNIN IMCQENTELH RKVDATREAN DKNSVMPDGF
201: SKPEEANVLI HLQLSQPHQQ AEGLQLKAPK LGFQLN

Best Arabidopsis Sequence Match ( AT3G57230.4 )
(BLAST)

001: MGRGKIAIKR INNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGVIIFSS TGRLYDFSSS SMKSVIERYS DAKGETSSEN DPASEIQFWQ KEAAILKRQL
101: HNLQENHRQM MGEELSGLSV EALQNLENQL ELSLRGVRMK KDQMLIEEIQ VLNREGNLVH QENLDLHKKV NLMHQQNMEL HEKVSEVEGV KIANKNSLLT
201: NGLDMRDTSN EHVHLQLSQP QHDHETHSKA IQLNYFSFIA

Arabidopsis Description

AGL16Agamous-like MADS-box protein AGL16 [Source:UniProtKB/Swiss-Prot;Acc:A2RVQ5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.