Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os08t0431900-00 | Rice | nucleus | 57.21 | 82.39 |
| GSMUA_Achr3P07310_001 | Banana | nucleus | 65.07 | 61.07 |
| OQU81712 | Sorghum | nucleus | 62.45 | 59.83 |
| GSMUA_Achr7P12610_001 | Banana | nucleus | 61.14 | 59.57 |
| GSMUA_Achr9P15540_001 | Banana | nucleus | 62.45 | 58.37 |
| OQU85202 | Sorghum | nucleus | 59.83 | 57.08 |
| GSMUA_Achr5P24560_001 | Banana | nucleus | 58.52 | 56.78 |
| OQU85464 | Sorghum | nucleus | 58.08 | 54.96 |
| Bra017638.1-P | Field mustard | nucleus | 55.46 | 52.92 |
| CDY49287 | Canola | nucleus | 55.46 | 52.92 |
| CDX69036 | Canola | nucleus | 55.02 | 52.5 |
| CDX72465 | Canola | nucleus | 55.02 | 52.5 |
| AT3G57230.1 | Thale cress | nucleus | 54.59 | 52.08 |
| CDX75412 | Canola | nucleus | 53.71 | 51.25 |
| KRH42047 | Soybean | nucleus | 50.22 | 47.72 |
| Solyc01g106170.2.1 | Tomato | mitochondrion | 26.64 | 41.22 |
| Bra011509.1-P | Field mustard | nucleus | 50.66 | 40.0 |
| EER89250 | Sorghum | nucleus | 35.37 | 36.0 |
| KXG23502 | Sorghum | nucleus | 31.88 | 32.74 |
| EER97510 | Sorghum | nucleus | 35.81 | 32.41 |
| KXG26975 | Sorghum | nucleus | 33.19 | 32.34 |
| EES07448 | Sorghum | nucleus | 35.81 | 32.16 |
| OQU93000 | Sorghum | nucleus | 33.19 | 31.28 |
| EES01878 | Sorghum | nucleus | 37.55 | 31.05 |
| EER97012 | Sorghum | nucleus | 32.75 | 30.86 |
| EES15309 | Sorghum | nucleus | 32.31 | 30.71 |
| KXG37536 | Sorghum | nucleus | 31.44 | 29.88 |
| EER90862 | Sorghum | nucleus | 31.88 | 29.8 |
| EES00105 | Sorghum | nucleus | 34.93 | 29.74 |
| EES15827 | Sorghum | nucleus | 33.62 | 28.62 |
| EER95753 | Sorghum | nucleus | 33.62 | 28.52 |
| OQU77603 | Sorghum | nucleus | 33.19 | 26.03 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | UniProt:A0A1Z5R9Q0 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 |
| InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 | InterPro:MADS_MEF2-like | EnsemblPlants:OQU80503 | ProteinID:OQU80503 |
| ProteinID:OQU80503.1 | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 |
| PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF263 | SMART:SM00432 | EnsemblPlantsGene:SORBI_3007G135301 | SUPFAM:SSF55455 |
| InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI000B424D9B | : | : |
Description
hypothetical protein
Coordinates
chr7:-:56046249..56061908
Molecular Weight (calculated)
26361.5 Da
IEP (calculated)
9.390
GRAVY (calculated)
-0.734
Length
229 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGKIEIKR IDNATSRQVT FSKRRSGLFK KAKELAILCD AEVGLVVFSS TGRLYDFAST SMKSVIERYS EAREEHHQTM SASAEAKLWQ REAGSLRQQL
101: HNLQEHHRQL LGQQLSGLDV RDLQNLENKL EMSLRNIRLK KDQLIFDQIQ ELSKKGSLMH QDNIELYNKV NLLHQENIEL RKKVYGQGVN EHPTSTTVRH
201: SILNTENEDV PINLELSMQR DRSETPSIG
101: HNLQEHHRQL LGQQLSGLDV RDLQNLENKL EMSLRNIRLK KDQLIFDQIQ ELSKKGSLMH QDNIELYNKV NLLHQENIEL RKKVYGQGVN EHPTSTTVRH
201: SILNTENEDV PINLELSMQR DRSETPSIG
001: MGRGKIVIQR IDDSTSRQVT FSKRRKGLIK KAKELAILCD AEVGLIIFSS TGKLYDFASS SMKSVIDRYN KSKIEQQQLL NPASEVKFWQ REAAVLRQEL
101: HALQENHRQM MGEQLNGLSV NELNSLENQI EISLRGIRMR KEQLLTQEIQ ELSQKRNLIH QENLDLSRKV QRIHQENVEL YKKAYMANTN GFTHREVAVA
201: DDESHTQIRL QLSQPEHSDY DTPPRANE
101: HALQENHRQM MGEQLNGLSV NELNSLENQI EISLRGIRMR KEQLLTQEIQ ELSQKRNLIH QENLDLSRKV QRIHQENVEL YKKAYMANTN GFTHREVAVA
201: DDESHTQIRL QLSQPEHSDY DTPPRANE
Arabidopsis Description
AGL21Agamous-like MADS-box protein AGL21 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZJ6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.