Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os06t0217300-01 | Rice | nucleus | 75.11 | 75.78 |
| TraesCS7D01G176700.1 | Wheat | nucleus | 73.78 | 73.45 |
| KXG31156 | Sorghum | nucleus | 71.56 | 70.61 |
| TraesCS7A01G175200.2 | Wheat | nucleus | 73.33 | 68.75 |
| TraesCS7B01G080300.2 | Wheat | cytosol | 72.0 | 67.22 |
| VIT_00s0729g00010.t01 | Wine grape | nucleus | 17.33 | 62.9 |
| VIT_03s0017g00360.t01 | Wine grape | nucleus | 17.33 | 61.9 |
| VIT_03s0167g00100.t01 | Wine grape | nucleus | 16.44 | 60.66 |
| KRH62216 | Soybean | nucleus | 17.33 | 59.09 |
| VIT_15s0024g01860.t01 | Wine grape | nucleus | 16.89 | 58.46 |
| VIT_03s0017g00440.t01 | Wine grape | nucleus | 24.0 | 57.45 |
| GSMUA_Achr3P06800_001 | Banana | nucleus | 55.11 | 54.15 |
| GSMUA_Achr10P... | Banana | nucleus | 52.0 | 51.32 |
| VIT_03s0017g00450.t01 | Wine grape | nucleus | 16.44 | 49.33 |
| VIT_00s0313g00070.t01 | Wine grape | nucleus | 49.33 | 48.9 |
| CDY13746 | Canola | nucleus | 50.22 | 47.88 |
| Bra030228.1-P | Field mustard | nucleus | 49.78 | 47.46 |
| CDX76906 | Canola | nucleus | 49.78 | 47.46 |
| Bra038511.1-P | Field mustard | nucleus | 50.67 | 47.3 |
| AT2G22540.1 | Thale cress | nucleus | 50.22 | 47.08 |
| CDX89487 | Canola | nucleus | 49.33 | 47.03 |
| KRH74496 | Soybean | nucleus | 47.11 | 46.7 |
| HORVU7Hr1G036130.10 | Barley | nucleus, plastid | 49.78 | 46.67 |
| CDY11019 | Canola | nucleus | 44.44 | 46.3 |
| Bra019221.1-P | Field mustard | nucleus | 44.44 | 46.3 |
| KRH69674 | Soybean | nucleus | 46.67 | 46.26 |
| PGSC0003DMT400041773 | Potato | nucleus | 48.89 | 46.22 |
| CDY03445 | Canola | nucleus | 44.89 | 45.7 |
| VIT_15s0107g00120.t01 | Wine grape | nucleus | 36.44 | 45.56 |
| VIT_15s0024g02000.t01 | Wine grape | nucleus | 17.33 | 45.35 |
| KXG40019 | Sorghum | nucleus | 46.67 | 45.26 |
| PGSC0003DMT400024247 | Potato | nucleus | 47.11 | 45.11 |
| KRH42097 | Soybean | nucleus | 40.89 | 44.88 |
| CDX92641 | Canola | nucleus | 44.0 | 43.23 |
| KRH49819 | Soybean | nucleus | 39.56 | 43.2 |
| AT4G24540.1 | Thale cress | nucleus | 42.22 | 43.18 |
| Solyc11g010570.1.1 | Tomato | nucleus | 49.33 | 41.89 |
| KRH52935 | Soybean | nucleus | 43.11 | 41.45 |
| GSMUA_Achr9P15180_001 | Banana | nucleus | 53.78 | 41.16 |
| PGSC0003DMT400083739 | Potato | nucleus | 38.22 | 38.91 |
| KRH10603 | Soybean | nucleus | 35.11 | 37.98 |
| Solyc04g076280.2.1 | Tomato | vacuole | 32.44 | 37.44 |
| KRH21764 | Soybean | nucleus | 34.22 | 37.38 |
| CDY25607 | Canola | nucleus | 28.89 | 37.14 |
| KRH10606 | Soybean | nucleus | 33.33 | 35.55 |
| VIT_03s0167g00070.t01 | Wine grape | nucleus | 28.0 | 34.43 |
| VIT_18s0001g07460.t01 | Wine grape | nucleus | 47.56 | 33.44 |
| Solyc01g105800.2.1 | Tomato | nucleus | 37.78 | 30.47 |
| KRH21757 | Soybean | nucleus | 32.44 | 29.44 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EntrezGene:8080034 | UniProt:C5Z6K5 | ncoils:Coil | EnsemblPlants:EER88077 |
| ProteinID:EER88077 | ProteinID:EER88077.1 | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR002487 |
| InterPro:IPR036879 | InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 |
| PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF342 | SMART:SM00432 | EnsemblPlantsGene:SORBI_3010G085400 |
| SUPFAM:SSF55455 | InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0001A8935D | RefSeq:XP_002436710.1 |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr10:+:7299379..7306909
Molecular Weight (calculated)
25036.7 Da
IEP (calculated)
6.404
GRAVY (calculated)
-0.599
Length
225 amino acids
Sequence
(BLAST)
(BLAST)
001: MARERREIRR IENAAARQVT YSKRRRGLFK KAEELAVLCD ADVALVVFSA TGKLSQFAST SMNHIIDKYS THSKNLGKSH QQSPIDLNIE QSKYTGLNEQ
101: LAEATHGLRQ MRGENLEGLS VEELHQMERK LEAGLHRVLS TKDQLFTQQI SELQQKGTQL EDENRRLKEQ MPQVLTAGTM VVGAGAENIL TEDGQSSESV
201: MTALHSGSSL DNDDGSDICL KLSLP
101: LAEATHGLRQ MRGENLEGLS VEELHQMERK LEAGLHRVLS TKDQLFTQQI SELQQKGTQL EDENRRLKEQ MPQVLTAGTM VVGAGAENIL TEDGQSSESV
201: MTALHSGSSL DNDDGSDICL KLSLP
001: MAREKIRIKK IDNITARQVT FSKRRRGIFK KADELSVLCD ADVALIIFSA TGKLFEFSSS RMRDILGRYS LHASNINKLM DPPSTHLRLE NCNLSRLSKE
101: VEDKTKQLRK LRGEDLDGLN LEELQRLEKL LESGLSRVSE KKGECVMSQI FSLEKRGSEL VDENKRLRDK LETLERAKLT TLKEALETES VTTNVSSYDS
201: GTPLEDDSDT SLKLGLPSWE
101: VEDKTKQLRK LRGEDLDGLN LEELQRLEKL LESGLSRVSE KKGECVMSQI FSLEKRGSEL VDENKRLRDK LETLERAKLT TLKEALETES VTTNVSSYDS
201: GTPLEDDSDT SLKLGLPSWE
Arabidopsis Description
AGL24MADS-box protein AGL24 [Source:UniProtKB/Swiss-Prot;Acc:O82794]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.